Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0446 ATGCTTTCGTTATTGTGCACGTTCTTGTTGCCGGCGATGAACGGTGGCCTATGTCACCGACGGACTTATATGGAGGCTTTGGAACAATCCACCGAGGAGATGTCGTGTCCGGGTTTGGCGGTGTTTCCGGTGGAGCTGCCGGAATTCGGCAAGGGCTCTGTCAAATTCGGAATGGATTTTTTATCGCAAGCTAGGAAAGCGCTGAGTGAGCGCTCTCCGTTCGAAGTTGCTGGAGAAACGTCGACTTCTGCTGTGGCAGTTACTCTGCCGAGTGAGTTGGGGAATTTGTTGAACCGTCATGGTGATAACCGTCGGCGCCACAAGAAGTCTTCTCACTCTGGTGGTGGCGGCGAGAAGAAGAAGAAATCGTCTCGGGCCAATGAGAAGGCGCGTGGCTCCAACATTTGGACTGAGATGGAGGTATACTTCAGGGACTTGACAATGTCTGATATTGATACTTTGGCTGAGGCTTCGTCGCTTTGTAATTTAACTTATAGTGAATGTTTTTCGATTCCTCGTTTGGGGAATGCTCCCAAATTTGATGTAGTTAGTACTGAGGATGAGAGAGTTGCTGCTCCAGCATTCAATTTAGTCAGTAGTGAGAATAATGAAAAAGTTGGTAGTGGGAATGAAAAAAATGCTGTTGAAGATGCAAATGGTTTGGATATGAAAATTGACGATGGTTTTGTGGGAATTGAGTCAGTGGACAATGTTGCTGTCGAAAATGATTTGCCTCGGGGTGATGAGATTCATGTTAGTTCTGATACCTGTGGTAGTTTAGAGTGGCTCTTGGGTTGTAGGAATAAGATTTCTTTAACTTCTGAGCGCCCTTCGAAGAAAATGAAGCTTTTGGGTGGTGGTGCTGGTTTAGAGAAAATTGTAATGGCTGCTCCTTGTGATGAGGGGCAACCTTTTTGTGATTATTGCAGCAGGGGAGACACTGACAGTGATTCTAATCCGTTAATTGCCTGCACTTCGTGTAAAGTTGTGGTTCATCAAAGGTGCTATGGTATACAAGATAACTTAGATGAGTCTTGGTTGTGCTCCTGGTGTAAGCAAAAGGGTGATATTGATGACTCAGAGAATCCTTGTGTGCTTTGCCCGAAGAAAGGTGGTGCTTTAAAACCTGTTAATGGCAGTGTTGAAAGTGTTGGGTCTGTCCACTTTGCGCACTTGTTTTGTGGCCTGTGGATGCCTGAGGTTTATATAGATGATTTGAAGAAGATGGAGCCCATTATGAATGTGGGGGAAATCAAGGAAAACAAGAGGAAATTAGTGTGTAATGTCTGCAAAGTGAAGTTTGGTGCATGTGTTCAGTGTAGCAATGGAGCTTGCGGGGCTTCTTTCCACCCGTTATGTGCAAGAGAAGCTAGGCATAGGATGGAAGTTTGGGCAAAGTATGGTGATGATGATGTAGAGTTGCAGGCTTTTTGCTTCAAACACTCAGATCTACAAGAGAACAGAAACATCTCTCCCTCAGGAGATTCTGTTGCTATTGGTGAATTTTCTGAAGTCAATGGCCCTCCAGTGACACTATCAGTGAACAGTGAACACAAGTTGAAAGTTGGTATCCAGAATGGAGTAGTGTGTGATAGTAGTTCAGACAAGTTAAACCATAATGAACCACAAGATGGTGGATTGTCTGATTGTAGGTTAAGTGCTCATGACCTGTTGGGATGTGGTGCTGGGGAGCAACACAATATTGGAGTGGTAGGGAGGGCCAATGAGAATGTTGATGCATCTGAATCCCTCAGTTTTGCACTTGTTTTGAAGAAGTTGATAGATCGAGGAAAAGTTGATGCAAAAGATGTAGCATTGGAGATTGGCATTTCACCAGATACACTAACAGAAAATATCAATGAAGCTTATATGGCCCCTGATGTGCGAGACAAAATAGTCAATTGGCTAAAAGCCCATGTATATACTACTGCATTTCAGAAAGGGGTAAAAGTCAAATTCAAACCAGCAAATGCATCTTCGGATGAGGGTGGATCCGCCCATGGTTCTGAGAGTTTACCAAAATCAAATTCAGGCTTGTTGGATCCTTTTGCTGTTAAGTCTGTCCCACCAAGGAGAAGAACTGTCAGCAACATTAGGATTTTGAATGATAATAAAATGATATGTTTATCTGAGGGGGTTACTAGTGAGAATGGGATGGCAGTGGACAAGATCAGAGTACGTCAGCCTGACCATGAAAATCCAGGAAGTTTGAACGAAGCATCCGTTCCTGATGCAACTGAAGTGAATTTAACCAAGTCTGAGGATTTTTGTCCTGCAGTTCAAGGCAATGCTGATAAACTCATCAAATCCAGCATATCTGGATGTGTTTTAGATGAAGAGTCCACTGCTTGTTTGCAGAATGCTTCTATGCTTTCCGAATGTCCTCTTCATCCTGCTTCAGAACCACCTGATTCCGGTTTAATAAAGAAGGAAACAATCTCTAATTATGTTCACCCATACATCAAAAATAAGTTGCAGCGAGTTCAAGATGGGGAGATCTTGGAGGGCTTTATATGGCCAAGGGAGGAGGCAAATTCTTCGTATGAGTTCTCTGTGGCCAGTGACTGCTCAAGTAGCCGAAATCAGCAATTAACTTGCGTTGACTTTTCCAAGCCTGATCAAGTATACAAGGAGCAATTGACTAGGGCTAAAAAAATGGAACTTCTGGAATTTTCTCCAGAAGATGAAGTGGAGGGAGAACTAATATATTACCAACATAGATTATTCCAAGATAGAGTTGCAAAGAAGGGGCTAACTGATAACTTAATCCACAATATTGCCAAGAGTTTGCCACAGGAGATTGATATGTCGCATCAGAGAAGATGGGATGCCGTGATTGTGAATCAATATCTGCAGGATCTTAAGGAGGCAAAAAAGCGGGGCAGAAAAGAAAGAAGGCATAAGGAAGCACAGGCAGTGCTGGCTGCTGCAACTGCTGCTGCTGCAGCATCTACTAGGAGTTCTTTCCGAAAAGACACCTTAGATGAATCTATGCAACAGGAGAATTTGGTGAAGTTGGATACTTTAAGTGGGAGGACCGGTGCTTCTTCTCAACCAATGCCACGAGCCAAAGAGACACTTTCTAGAGTAGCTATGACAAGAACTTCGTCAGAGAAATATTCGGATTTTGGCCTGTCAATCTCAAATTTCTCCAAGGAGCAGCCTAAATCATGCGATATCTGCAGACGACCTGAGACTATGTTAAACCCCATCCTACTCTGCTCTGGTTGCAAGGTTGCAGTTCACTTGGATTGCTATCGTAGTGTGAAAGATACAATGGGTCCATGGTACTGTGAATTATGTGAAAATTTATCATCTAGAAGCTCTGCAACATCTACTATCAATTCCCGGCAGAAGCCTTATTTTGTTGCAGAGTGTGCTCTCTGTGGTGGTGCTACTGGAGCTTTTAGGAGGTCTTGTGATGGCCAATGGGTTCATGCTTTTTGTGCTGAGTGGGTTTTTGAGTCAACATTCAGAAGAGGACAAATAAATGCTGTTGAAGGAGTGGAAACTTTGTTGAAGGGAACTGACATTTGCTGCATCTGTTGCTGCAAGCATGGTGTATGCATGAAGTGTTGCTATGGCCATTGCCGAACCACATTCCATCCATACTGTGCTAGAAGTGCTGGTTTGTACATGAATGTCAGGACTACTGGTGGCAAGCTGCAACACAAGGCTTACTGTCAAAGACACAGTTTGGAGCAGAAGGAAAAGGCTGAGACACAAAAACATGGAATCGAAGAGTTTAAAAGAATGAAGCAAATTCGGGTTGAACTTGAGAGATTACGTCTCCTTTGTGAAAGAATTGTCAAACGTGAAAAAATAAAGCGAGAGTTGATTCTATGCTCGCATGACATGCTTGCCTTCAAAAGGGATCATGTTGCTAGGTCTATGCTGGTTCATAGCCCTTTCATACTTCCTGATGGCAGTTCAGAATCAGCTACAACATCTCTCAAAGGGAACACTGAGGGATACAGATCATGCAGTGAAGCTGTCCAACAATCAGATGACGTGACTGTGGACAGCTCAGTTTCTGCTAAGCACCGTGTCAGACTTGCTGTATCCATGGACACAGACCCAAAAGTGGATGATGACTGCTCAACCTCACAATGTCAATATAATCACAAGATTCCAGAAAGGATGCAATTTTCTGGCAAGCAGATTCCCCGTAGAGCTTCTGCCACATTGCATTATCATTCAGATGAGGGTGTAAGGAGATCCAAATCTAGGAAGCATGCAGAGACATTTGGAAAAGAGCTTGTAATGACGTCGGATGAAGCATCTATGAAAAATTCAAGGTTACCTAAAGGATATGCATATGTTCCTGCTGATTGCCTGTCAAATGACAAGCACTCCAATGAAGATGTATATGCTAGTGAACCAGTGGAATGA 4392 0.4344 MLSLLCTFLLPAMNGGLCHRRTYMEALEQSTEEMSCPGLAVFPVELPEFGKGSVKFGMDFLSQARKALSERSPFEVAGETSTSAVAVTLPSELGNLLNRHGDNRRRHKKSSHSGGGGEKKKKSSRANEKARGSNIWTEMEVYFRDLTMSDIDTLAEASSLCNLTYSECFSIPRLGNAPKFDVVSTEDERVAAPAFNLVSSENNEKVGSGNEKNAVEDANGLDMKIDDGFVGIESVDNVAVENDLPRGDEIHVSSDTCGSLEWLLGCRNKISLTSERPSKKMKLLGGGAGLEKIVMAAPCDEGQPFCDYCSRGDTDSDSNPLIACTSCKVVVHQRCYGIQDNLDESWLCSWCKQKGDIDDSENPCVLCPKKGGALKPVNGSVESVGSVHFAHLFCGLWMPEVYIDDLKKMEPIMNVGEIKENKRKLVCNVCKVKFGACVQCSNGACGASFHPLCAREARHRMEVWAKYGDDDVELQAFCFKHSDLQENRNISPSGDSVAIGEFSEVNGPPVTLSVNSEHKLKVGIQNGVVCDSSSDKLNHNEPQDGGLSDCRLSAHDLLGCGAGEQHNIGVVGRANENVDASESLSFALVLKKLIDRGKVDAKDVALEIGISPDTLTENINEAYMAPDVRDKIVNWLKAHVYTTAFQKGVKVKFKPANASSDEGGSAHGSESLPKSNSGLLDPFAVKSVPPRRRTVSNIRILNDNKMICLSEGVTSENGMAVDKIRVRQPDHENPGSLNEASVPDATEVNLTKSEDFCPAVQGNADKLIKSSISGCVLDEESTACLQNASMLSECPLHPASEPPDSGLIKKETISNYVHPYIKNKLQRVQDGEILEGFIWPREEANSSYEFSVASDCSSSRNQQLTCVDFSKPDQVYKEQLTRAKKMELLEFSPEDEVEGELIYYQHRLFQDRVAKKGLTDNLIHNIAKSLPQEIDMSHQRRWDAVIVNQYLQDLKEAKKRGRKERRHKEAQAVLAAATAAAAASTRSSFRKDTLDESMQQENLVKLDTLSGRTGASSQPMPRAKETLSRVAMTRTSSEKYSDFGLSISNFSKEQPKSCDICRRPETMLNPILLCSGCKVAVHLDCYRSVKDTMGPWYCELCENLSSRSSATSTINSRQKPYFVAECALCGGATGAFRRSCDGQWVHAFCAEWVFESTFRRGQINAVEGVETLLKGTDICCICCCKHGVCMKCCYGHCRTTFHPYCARSAGLYMNVRTTGGKLQHKAYCQRHSLEQKEKAETQKHGIEEFKRMKQIRVELERLRLLCERIVKREKIKRELILCSHDMLAFKRDHVARSMLVHSPFILPDGSSESATTSLKGNTEGYRSCSEAVQQSDDVTVDSSVSAKHRVRLAVSMDTDPKVDDDCSTSQCQYNHKIPERMQFSGKQIPRRASATLHYHSDEGVRRSKSRKHAETFGKELVMTSDEASMKNSRLPKGYAYVPADCLSNDKHSNEDVYASEPVE 1463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0446 1463 MobiDBLite consensus disorder prediction 101 115 - -
Lal17g0446 1463 SMART PHD_3 305 352 IPR001965 -
Lal17g0446 1463 SMART PHD_3 426 482 IPR001965 -
Lal17g0446 1463 SMART PHD_3 1179 1232 IPR001965 -
Lal17g0446 1463 SMART PHD_3 1057 1102 IPR001965 -
Lal17g0446 1463 Coils Coil 1252 1272 - -
Lal17g0446 1463 MobiDBLite consensus disorder prediction 1443 1463 - -
Lal17g0446 1463 ProSitePatterns Zinc finger PHD-type signature. 306 351 IPR019786 -
Lal17g0446 1463 ProSiteProfiles Zinc finger PHD-type profile. 303 354 IPR019787 -
Lal17g0446 1463 ProSiteProfiles Extended PHD (ePHD) domain profile. 1123 1232 IPR034732 -
Lal17g0446 1463 Coils Coil 951 971 - -
Lal17g0446 1463 ProSitePatterns Zinc finger PHD-type signature. 1058 1101 IPR019786 -
Lal17g0446 1463 ProSiteProfiles Zinc finger PHD-type profile. 1055 1104 IPR019787 -
Lal17g0446 1463 SUPERFAMILY FYVE/PHD zinc finger 1045 1103 IPR011011 -
Lal17g0446 1463 Pfam PHD-finger 319 352 - -
Lal17g0446 1463 Pfam PHD-finger 1069 1102 - -
Lal17g0446 1463 MobiDBLite consensus disorder prediction 656 677 - -
Lal17g0446 1463 MobiDBLite consensus disorder prediction 662 676 - -
Lal17g0446 1463 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 357 484 IPR013083 -
Lal17g0446 1463 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1122 1233 IPR013083 -
Lal17g0446 1463 MobiDBLite consensus disorder prediction 95 131 - -
Lal17g0446 1463 ProSiteProfiles Extended PHD (ePHD) domain profile. 361 482 IPR034732 -
Lal17g0446 1463 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1047 1107 IPR013083 -
Lal17g0446 1463 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 296 356 IPR013083 -
Lal17g0446 1463 PANTHER PHD-FINGER DOMAIN CONTAINING PROTEIN FAMILY-RELATED 836 1456 - -
Lal17g0446 1463 PANTHER PHD-FINGER DOMAIN CONTAINING PROTEIN FAMILY-RELATED 123 490 - -
Lal17g0446 1463 SUPERFAMILY FYVE/PHD zinc finger 296 370 IPR011011 -
Lal17g0446 1463 CDD ePHD 1126 1231 - -
Lal17g0446 1463 Pfam PHD-zinc-finger like domain 1125 1231 - -
Lal17g0446 1463 Pfam PHD-zinc-finger like domain 363 481 - -
Lal17g0446 1463 PANTHER PHD FINGER PROTEINS 836 1456 - -
Lal17g0446 1463 PANTHER PHD FINGER PROTEINS 123 490 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0446 Lal-Chr17 3033314 3044984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0446 300 498 C2H2 Transcription Factor Family AT3G14740 30.198 1.23e-17 84.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lal17g0446 zf-HC5HC2H_2 1.4e-23 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0446 - - gmx:100775631 1918.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0446 17 3033314 3044984 Lal17g0446 17 3033314 3044984 ECH
Lal17g0446 17 3033314 3044984 Lal4g0392 4 2691751 2702923 LSH