Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0439 ATGAGCAATTTAAGAACCCTGTGTAGACCTTACACTGTTTTCACATTCATCAGTTGCAGAAACCAATTTCAGCTAAGGGATTCGTTTCGGAACCCTAATTTAAAAACCCGTTTATTATCACCCTCTTTGTATTCTACATGGCTCGATTCTAACAGGACTGAACCCTGGTTTCGTGTGAATCAGAGAAGAACTGTGGCCAAGGCATCAAATTGGGCTGAACAAAAATCCCCTTATGAAACCCTTGAATTGGAAAGGGATGCTGGTGATGATCAGATAAAGAGTGCATATAGGCGTTTGGCAAAATTTTATCATCCAGATGTCTATGATGGTAGAAGAACCCTTGAGGAAGGTGAAACAGCAGAAGCTAGGTTCATTAAGATTCAAGCTGCATATGAATTGCTTATAGATGAGGAGAGGAGAAGTCAGTATGATATGGATAACCGATTCAACCCTATGAAGGCCTCTCAGGCATGGAGGGAATGGCTTATGAAAAAGAGAAAAGCTTTTGATCAGCGAGGTGATATGGCAGTTGCTGCTTGGGCTGAGCAGCAACAGCAAAAGTTGAATATTCGCGTGCGTCAACTTTCTCGATCAAAGATTGATCTAGATGAGGCAAGGAAGATATTGGCAAGAGAAAAAAAGGCTTCTGCTGAAAATTTCTCCAATACCCTTAAAAGGCACACACTTATACTAAAGAAAAGAGATTTGGTAAGAAGAAATGCTGAAGAGGAAAAGAAGAAGATAATAAGCCAGCTCTTGGCAGCAGAAGGTCTTGAGCTAGATTCAGATAGTGATGATGCCCTTTAG 807 0.4089 MSNLRTLCRPYTVFTFISCRNQFQLRDSFRNPNLKTRLLSPSLYSTWLDSNRTEPWFRVNQRRTVAKASNWAEQKSPYETLELERDAGDDQIKSAYRRLAKFYHPDVYDGRRTLEEGETAEARFIKIQAAYELLIDEERRSQYDMDNRFNPMKASQAWREWLMKKRKAFDQRGDMAVAAWAEQQQQKLNIRVRQLSRSKIDLDEARKILAREKKASAENFSNTLKRHTLILKKRDLVRRNAEEEKKKIISQLLAAEGLELDSDSDDAL 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0439 268 Gene3D DnaJ domain 61 164 IPR036869 -
Lal17g0439 268 PRINTS DnaJ domain signature 78 96 IPR001623 -
Lal17g0439 268 PRINTS DnaJ domain signature 96 111 IPR001623 -
Lal17g0439 268 PRINTS DnaJ domain signature 119 139 IPR001623 -
Lal17g0439 268 PRINTS DnaJ domain signature 165 184 IPR001623 -
Lal17g0439 268 SUPERFAMILY Chaperone J-domain 71 145 IPR036869 -
Lal17g0439 268 CDD DnaJ 77 136 IPR001623 -
Lal17g0439 268 ProSiteProfiles dnaJ domain profile. 76 147 IPR001623 -
Lal17g0439 268 Pfam DnaJ domain 77 144 IPR001623 -
Lal17g0439 268 PANTHER LD30543P 41 265 - -
Lal17g0439 268 PANTHER CO-CHAPERONE PROTEIN DJLA 41 265 - -
Lal17g0439 268 SMART dnaj_3 75 139 IPR001623 -
Lal17g0439 268 ProSitePatterns Nt-dnaJ domain signature. 124 143 IPR018253 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0439 Lal-Chr17 2996371 2999012 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0439 68 144 C2H2 Transcription Factor Family AT1G74250 38.961 2.67e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0439 - - gmx:100808285 431.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0439 17 2996371 2999012 Lal17g0439 17 2996371 2999012 ECH