Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0438 ATGGACATATATGAGCCATTCAAGCTAGTTAACATGTGGGGAGACAGCTTTAAGGTTGAAGTTGGATTGAATTCAATTGCTTCACCAGTGTTACTAGTGAATACCAATATGGAGGCTAAATCAGAATATATTCCTCATGAACCAAGGGAACCTTGTGGAAATGATCAAGAGACTACTAGTGCTAACAAAGATGTTAGTAAGGTGCTAAGACGCCTAGCTCAGAACCGCGAGGCTGCTAAGAAAAGTCGTCTGCGGAAAAAGGCTTATGTTCAACAATTAGAAACAAGCCGTTTGAAACTCATGCAATTGGAGTTGGAGATAGGGAAAACAAAAAAGCAGGGTATGTACATTGGTGGTGCATTAGATGCCAGTTATATGGGATCTCCGGGAACATTACAGTTGCAATCAGGGATTGTTGCATTTGAATTTGAATATGGACATTGGGTTAAAGAGCAACAGAGGTGGAATGAAGAACTTAGAAAAGCATTTCAAAATAATGCATCAAATGTTCAGCTCCATATACTTGTTCAGAGTGTCTTGAACCATTACTCAAATCTTTTCAGAATGAAAGTAGATGCTGCAAAGATTAATGTCTTCTATTTAATTTCTGGTGTGTGGAAAGCATCAGTAGAGCGCATTTTCCTATGGATCGGAGGATCTCGCCCGTCACAACTTCTAAATATCATTGTACCCCAACTTGAGCCTTTGGCTGATAAACAAATGGCTAGTATTAACAATCTCCGCTTATCGTCTCAGCAAGCTGAAGATGCTCTTTCACAAGGACTGGATAAGCTTCAGCAAAGTATGGTTGACAACATTGGAGTCGATCCACTAGGGACAGCGAACTTCGAGTTTCAAATCGCTGACGCCATGGAGAAAATTGAAGCACTAGAAGGTTTTGTAAACCAGGCAGATCATCTGAGGCAACAAACTTTGCTTCACATGTCGCGCATCCTGACAACTCACCAAGCTGCTCAAGGATTGGTGGCATTAGGCGAATACTTACACCGTCTTCGTAATCTTAGTTCTCTTTGGGCTAATCGTTCATGTGATTCTGCATAG 1062 0.4115 MDIYEPFKLVNMWGDSFKVEVGLNSIASPVLLVNTNMEAKSEYIPHEPREPCGNDQETTSANKDVSKVLRRLAQNREAAKKSRLRKKAYVQQLETSRLKLMQLELEIGKTKKQGMYIGGALDASYMGSPGTLQLQSGIVAFEFEYGHWVKEQQRWNEELRKAFQNNASNVQLHILVQSVLNHYSNLFRMKVDAAKINVFYLISGVWKASVERIFLWIGGSRPSQLLNIIVPQLEPLADKQMASINNLRLSSQQAEDALSQGLDKLQQSMVDNIGVDPLGTANFEFQIADAMEKIEALEGFVNQADHLRQQTLLHMSRILTTHQAAQGLVALGEYLHRLRNLSSLWANRSCDSA 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0438 353 SMART brlzneu 63 123 IPR004827 GO:0003700|GO:0006355
Lal17g0438 353 SUPERFAMILY Leucine zipper domain 67 100 IPR046347 GO:0003700|GO:0006355
Lal17g0438 353 Pfam bZIP transcription factor 67 96 IPR004827 GO:0003700|GO:0006355
Lal17g0438 353 Coils Coil 86 113 - -
Lal17g0438 353 Gene3D - 66 115 - -
Lal17g0438 353 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 70 85 IPR004827 GO:0003700|GO:0006355
Lal17g0438 353 ProSiteProfiles DOG1 domain profile. 138 348 IPR025422 GO:0006351|GO:0043565
Lal17g0438 353 Pfam Seed dormancy control 157 230 IPR025422 GO:0006351|GO:0043565
Lal17g0438 353 PANTHER FACTOR TGA7, PUTATIVE-RELATED 1 349 - -
Lal17g0438 353 PANTHER TRANSCRIPTION FACTOR TGA9 1 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0438 Lal-Chr17 2992140 2995869 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0438 1 348 Calmodulin-binding Proteins AT1G77920 52.355 8.28e-125 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Lal17g0438 DOG1 2.8e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0438 K14431 - gmx:100794268 513.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0438 17 2992140 2995869 Lal17g0438 17 2992140 2995869 ECH
Lal17g0438 17 2992140 2995869 Lal21g0500 21 3559278 3567193 LSH
Lal6g0500 6 3208246 3212274 Lal17g0438 17 2992140 2995869 PCT
Lal17g0438 17 2992140 2995869 Lal6g0500 6 3208246 3212274 PCT