Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0431 ATGTCTTCAATGGGCCTTCCTGCTGCTGAAAATCTTCTTGAAACAAAAGAGATAAATGAGAGAACTTATTCTTTAGATGGTAAGGCACAACATCATCATATTCACAAAGTGGGAATTCCTCCAAAGCAGAACCTCTTCAAGGAATTCAAAGCAACCATAAAAGAAGCATTCTTTGCTGATGAGCCTCTAAGACACTTCAAAGATCAAACTAAGTTGCGAAAACTCGTCCTCGGTATCGAGGCCATATTCCCCATACTTTCATGGTGTAGAAATTACAACCTTAAAAAATTTAGAGGTGATATCATATCAGGTCTAACTATTGCAAGTCTCTGCATCCCTCAGGATATTGGATATGCCAAGCTTGCACATTTGGATCCACAATATGGATTGTACTCTAGCTTTGTTCCACCACTGATTTATGCTATCATGGGAAGTTCTCGTGATATTGCTATTGGACCAGTGGCAGTGGTTTCTCTCTTGTTGGGGACATTACTTAGTGATGAGATTGATCCAAATAAACATCCAGAAGAATATAGAAGACTTGCTTTTACAGCAACCTTTTTTGCTGGGATCACACAAGCAACACTTGGGATTTGTAGGCTAGGATTCTTGATTGATTTCCTATCTCATGCTGCTATTGTGGGTTTTATGGGTGGTGCTGCCATCACAATTGCACTTCAACAACTGAAGGGTTTCCTTGGCATTAGAACAAAAAATTTCACAACAAAAACTGATATTGTCTCTGTCATGAAATCAATATTTGAAACAGCCCATCATGGCGGAAAGAAGAACAAGAAATACTTCTGGGTGCCAGCAATTGCCCCATTGATATCAGTTGTGCTGTCCACATTTTTCGTATTCATAACCCGTGCAGATAAGCATGGAGTGGATATTGTAAGACACATAGAGAGAGGGATCAATCCTTCATCTGTTGACAAAATTTACTTTAGTGGCGAGTACCTTAGCAAAGGTTTTAAAATTGGCGTGGTGGCAGGCATGGTAGCATTGACTGAAGCTGTGGCAATTGGAAGAACATTTGCAACTATGAAGGATTATCAATTAGATGGAAACAAAGAAATGGTGGCATTAGGAGCAATGAATGTTGTTGGTTCAATGACTTCATGTTATGTGGCAACTGGTTCATTCTCTCGGTCCGCAGTGAATTTCATGGCTGGCTGCCAAACTGCAGTCTCAAATATTGTGATGTCCATAGTTGTGGTCTTAACACTGTTTTTCTTAACCCCTCTTTTCAATTACACTCCAAATGCAATTCTTGCTTCCATCATCATTTCTGCTGTCATCAGCCTTATTGACTTTGAGGCAGCAATATTGATTTGGAAGATTGATAAATTTGATTTTATTGCTTGCATGGGAGCATTCTTTGGTGTTGTTTTTATCTCTGTTGAGATTGGACTTCTAATAGCGGTCTCTATATCCTTTGCAAAGATCTTACTACAGGTCACAAGGCCCAGGACTGCTATTCTAGGTAAGATTCCTATGACATATGTCTATAGAAACACCCAACAATACCCAGAAGCTACTAAGGTTCCAGGTGTACTGATTGTAAGAGTGGATTCTGCAATATATTTTTCCAACTCCAATTATGTTAAAGAAAGGATATTAAGATGGCTGGTAGATGAAGAAGAACAAATAAAAGGAGACTATCAAACAAAAATCCAATTTTTGATAGTTGAAATGTCACCTGTGACTGACATAGACACCAGTGGCATCAATGCCCTTGAAGAGTTATATAGAAGTCTTAAGAAGAAAAGTATTGAGCTTGTTCTTGCAAATCCTGGTCCAGTAGTGATAGACAAGCTTTACACATCAAATTTTGCAAACTTGATTGGTGTGGACAATATCTTCCTAACTGTAGCAGATGCTGTTGCATATTGTTCTCCAAAGATGGCTGAAGACCCTTGA 1923 0.389 MSSMGLPAAENLLETKEINERTYSLDGKAQHHHIHKVGIPPKQNLFKEFKATIKEAFFADEPLRHFKDQTKLRKLVLGIEAIFPILSWCRNYNLKKFRGDIISGLTIASLCIPQDIGYAKLAHLDPQYGLYSSFVPPLIYAIMGSSRDIAIGPVAVVSLLLGTLLSDEIDPNKHPEEYRRLAFTATFFAGITQATLGICRLGFLIDFLSHAAIVGFMGGAAITIALQQLKGFLGIRTKNFTTKTDIVSVMKSIFETAHHGGKKNKKYFWVPAIAPLISVVLSTFFVFITRADKHGVDIVRHIERGINPSSVDKIYFSGEYLSKGFKIGVVAGMVALTEAVAIGRTFATMKDYQLDGNKEMVALGAMNVVGSMTSCYVATGSFSRSAVNFMAGCQTAVSNIVMSIVVVLTLFFLTPLFNYTPNAILASIIISAVISLIDFEAAILIWKIDKFDFIACMGAFFGVVFISVEIGLLIAVSISFAKILLQVTRPRTAILGKIPMTYVYRNTQQYPEATKVPGVLIVRVDSAIYFSNSNYVKERILRWLVDEEEQIKGDYQTKIQFLIVEMSPVTDIDTSGINALEELYRSLKKKSIELVLANPGPVVIDKLYTSNFANLIGVDNIFLTVADAVAYCSPKMAEDP 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0431 640 ProSiteProfiles STAS domain profile. 509 632 IPR002645 -
Lal17g0431 640 Pfam STAS domain 510 628 IPR002645 -
Lal17g0431 640 PANTHER SULFATE TRANSPORTER 26 260 IPR001902 GO:0015301|GO:0016020|GO:0055085
Lal17g0431 640 PANTHER SULFATE TRANSPORTER 261 640 IPR001902 GO:0015301|GO:0016020|GO:0055085
Lal17g0431 640 ProSitePatterns SLC26A transporters signature. 126 147 IPR018045 GO:0008271|GO:0008272
Lal17g0431 640 PANTHER HIGH AFFINITY SULFATE TRANSPORTER TYPE 1 26 260 - -
Lal17g0431 640 PANTHER HIGH AFFINITY SULFATE TRANSPORTER TYPE 1 261 640 - -
Lal17g0431 640 Pfam Sulfate permease family 97 259 IPR011547 GO:0016021
Lal17g0431 640 Pfam Sulfate permease family 261 457 IPR011547 GO:0016021
Lal17g0431 640 Gene3D STAS domain 489 636 IPR036513 -
Lal17g0431 640 SUPERFAMILY SpoIIaa-like 511 633 IPR036513 -
Lal17g0431 640 CDD STAS_SulP_like_sulfate_transporter 510 625 - -
Lal17g0431 640 TIGRFAM sulP: sulfate permease 84 628 IPR001902 GO:0015301|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0431 Lal-Chr17 2911130 2917215 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0431 1 639 Inorganic Solute Cotransporters AT1G22150 71.558 0.0 928
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0431 K17470 - gmx:100804208 1030.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0431 17 2911130 2917215 Lal17g0431 17 2911130 2917215 ECH
Lal18g1143 18 14353709 14358498 Lal17g0431 17 2911130 2917215 PCT
Lal6g0490 6 3133947 3137592 Lal17g0431 17 2911130 2917215 PCT
Lal17g0431 17 2911130 2917215 Lal18g1143 18 14353709 14358498 PCT
Lal17g0431 17 2911130 2917215 Lal6g0490 6 3133947 3137592 PCT