Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0423 ATGCAATTTAACAGTGTTCCTCATAATTCTCTAATCTTCTTCTCCTTCTCCCCCCTTTCTGTAACACCCCGCTTCTCTGAATCCCTTTCTGTTAATAATCTGTCTTTCAAAAACGATTTTGGGTTAATTATCACTACAGTTATGATGGATTTGTTCAACAACATGTCACAGCTTCACTCAGATCCATTCAGGGGTGAGTTAATGGAAGTTCTTGAAACTTTTATGAAAAGTCCTTCCCCAACTTCAACCCCTTCACTTTCACTTTCACCTTCTCTTTCTTCTTCATCACCTTTCTCAAACTCAACTCAACCTTCTACTTCTTCTTCTTCTTACTTCAACTCCTCTCCTTTTCTTCAAACTCAACACCCAATTGAATGCTCTTACAATAGCCAAAACATTATTGGCTTTGAGCAATTATGTTCTTCTTCTTCTTCTCCTTCTTCTCCTTCTTCTCTACTTGGCCTCAATCACTTAACCCTTTCTCAGATCAATCAGATCCAGGCTCAGATCCATCTTCAGAATATGCAAAACTTTCAGCACAACAACACAACCTTCAATTTCCTTAGTCCTAAGCCTATCCCAATGAAGCTCGTGGGTACACCACCAAAACCCACAAAGCTATACAGAGGGGTGAGGCAAAGACACTGGGGAAAGTGGGTTGCTGAGATTCGACTTCCAAAAAACAGAACAAGGCTTTGGCTTGGTACCTTTGACACTGCTGAAGAAGCTGCTTTGGCTTATGATAAAGCTGCTTATAAGCTCAGAGGTGACTTTGCTAGGCTCAATTTCCCAAATCTTAAGCACCAAGGTTCTTGTGTTGGTGATGAGTTTGGTGGTGAGTATAAGCCTCTTCATTCTTCTGTTGATGCTAAGCTTCAAGCTATTTGTGAAGGCTTGGCTGATATGCAGAAACAAGGAAAGTCAGAGAAGAAGTCTAAGGCTATGATCTCTTCAAAGAGATCAAAATCAAAACTTGGTTCAAAGATGGCTCAGCCAGAAGAATCGGTGTCACTTGATGTGAAGGGATTGGAGAACTCATGCAAGGTGGAAACTTTATCTTTGTCTCCAGTGATGACAGAGAGTGAAGGATCTGAAGGTTCTTCACCCCTTTCAGATCTTACCTTTGCTGATGTTAATGAGCCTCAGTGGGAAGGTCCTTTGAATAATTTAAATTTGCAAAAGTACCCTTCTTATGAGATTGATTGGGATTCTCTGTGA 1218 0.4072 MQFNSVPHNSLIFFSFSPLSVTPRFSESLSVNNLSFKNDFGLIITTVMMDLFNNMSQLHSDPFRGELMEVLETFMKSPSPTSTPSLSLSPSLSSSSPFSNSTQPSTSSSSYFNSSPFLQTQHPIECSYNSQNIIGFEQLCSSSSSPSSPSSLLGLNHLTLSQINQIQAQIHLQNMQNFQHNNTTFNFLSPKPIPMKLVGTPPKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLKHQGSCVGDEFGGEYKPLHSSVDAKLQAICEGLADMQKQGKSEKKSKAMISSKRSKSKLGSKMAQPEESVSLDVKGLENSCKVETLSLSPVMTESEGSEGSSPLSDLTFADVNEPQWEGPLNNLNLQKYPSYEIDWDSL 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0423 405 CDD AP2 206 266 IPR001471 GO:0003700|GO:0006355
Lal17g0423 405 Gene3D AP2/ERF domain 207 265 IPR036955 GO:0003700|GO:0006355
Lal17g0423 405 MobiDBLite consensus disorder prediction 76 107 - -
Lal17g0423 405 PRINTS Ethylene responsive element binding protein signature 208 219 IPR001471 GO:0003700|GO:0006355
Lal17g0423 405 PRINTS Ethylene responsive element binding protein signature 230 246 IPR001471 GO:0003700|GO:0006355
Lal17g0423 405 ProSiteProfiles AP2/ERF domain profile. 207 264 IPR001471 GO:0003700|GO:0006355
Lal17g0423 405 Pfam AP2 domain 208 256 IPR001471 GO:0003700|GO:0006355
Lal17g0423 405 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 48 404 - -
Lal17g0423 405 SUPERFAMILY DNA-binding domain 207 264 IPR016177 GO:0003677
Lal17g0423 405 MobiDBLite consensus disorder prediction 306 337 - -
Lal17g0423 405 SMART rav1_2 207 270 IPR001471 GO:0003700|GO:0006355
Lal17g0423 405 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 48 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0423 Lal-Chr17 2851831 2853454 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0423 151 405 AP2-EREBP Transcription Factor Family AT1G78080 60.370 1.32e-92 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lal17g0423 AP2 9.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0423 K09286 - gmx:100800478 375.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0423 17 2851831 2853454 Lal17g0423 17 2851831 2853454 ECH
Lal17g0423 17 2851831 2853454 Lal21g0491 21 3493589 3494635 LSH
Lal17g0423 17 2851831 2853454 Lal4g0376 4 2565598 2566632 LSH
Lal22g0451 22 2950290 2952599 Lal17g0423 17 2851831 2853454 PCT
Lal6g0485 6 3102309 3104129 Lal17g0423 17 2851831 2853454 PCT
Lal17g0423 17 2851831 2853454 Lal22g0451 22 2950290 2952599 PCT
Lal17g0423 17 2851831 2853454 Lal6g0485 6 3102309 3104129 PCT