Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0420 ATGACAAATCATAATGTGGTGGCTCCTAATGATGTGAAGGTTTTGAACTTCAACACAATTTTTGTGATGGCAACTTCCATTTCAAATTCAAACTCTCAACTGCTGTCAAATGAAGCAGTGCAAAAACCACTGGTCATGTTTGGTGGACTCTTGACCCTGTCTCAAAGAAATGTTATGAAAAGGTTGGAGGGAAATAAAGTTCACAATTGGGTTGATTCAATCAGAGCTTCTTCTCCAACTCGTGCCAAATCTACTCTACATGCTTCAGAAAACCAAGACAAAAGTTCTTGGAATCTTTATCACCCTTCAGCACTGAACATGTTTGATCAGATAATATCTAACTCGAAAGGAAAACAGATTGTAACTTTTCTTGACTATGATGGAACTCTCTCCCCAATTGTTGCAGATCCAGAGAAAGCATACATGACCAGCAAGATGAAAGGGACACTAAAGGAAATAGCAACACATTTTCCTACGGCCATCGTGACCGGAAGGTGCAGAGACAAGGTATATAATTTTGTAAGATTGGCTGAAGTGTATTACGCAGGAAGCCATGGTATGGACATCAAGGCCCCCCAAAAAAATCAAAGTCCTAAGAAATTCCATGGTGCATTATTTCAGGGTAATAATGGAAAAGCAGTGCTATTCCAACCTGCGAGTCAATTCCTGCCAATGATCAACGAGGTGTACAAGATTTTGCAAGAAATAACAAAATCTGTGCCTGGGGCTATGGTTGAGAACAACAAATTTTGTTTGTCCGTGCATTTCCGTTGTGTTGACGAAAAGAGTTGGGCACCATTGGCGGAGAAAGTTAAATTGGTGCTAAATAAGTACCCAAAACTTAAACTAACCCAAGGGAGAAAAGTCCTAGAGATTCGTCCAACCATCAAATGGGACAAGGGCAAGGCTATCGAATTCTTGTTGCATTCACTAGGATATGACAATTCTGATAAAGTATTTCCCATCTATATCGGTGATGATCGAACGGACGAGGATGCTTTTAAGGTTTTGCGTAGTAGGGGTCAAGGGATTGGGATTCTTGTTTCTAGATTTCCAAAAGAAACAGAAGCTTCTTACACCTTGGAAGATCCATCACAGGCAAGCATCAAATATCTTGTTGAGAAATTTTTGAGGCAATTAGTGGAGTGGAAAAGATCAATCACTGTGACTCGCACTAGTGTATAG 1185 0.4017 MTNHNVVAPNDVKVLNFNTIFVMATSISNSNSQLLSNEAVQKPLVMFGGLLTLSQRNVMKRLEGNKVHNWVDSIRASSPTRAKSTLHASENQDKSSWNLYHPSALNMFDQIISNSKGKQIVTFLDYDGTLSPIVADPEKAYMTSKMKGTLKEIATHFPTAIVTGRCRDKVYNFVRLAEVYYAGSHGMDIKAPQKNQSPKKFHGALFQGNNGKAVLFQPASQFLPMINEVYKILQEITKSVPGAMVENNKFCLSVHFRCVDEKSWAPLAEKVKLVLNKYPKLKLTQGRKVLEIRPTIKWDKGKAIEFLLHSLGYDNSDKVFPIYIGDDRTDEDAFKVLRSRGQGIGILVSRFPKETEASYTLEDPSQASIKYLVEKFLRQLVEWKRSITVTRTSV 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0420 394 Pfam Trehalose-phosphatase 123 365 IPR003337 GO:0003824|GO:0005992
Lal17g0420 394 Gene3D - 123 361 IPR023214 -
Lal17g0420 394 CDD HAD_TPP 123 364 - -
Lal17g0420 394 Gene3D - 201 295 - -
Lal17g0420 394 SUPERFAMILY HAD-like 123 377 IPR036412 -
Lal17g0420 394 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 25 387 IPR044651 GO:0004805|GO:0005992
Lal17g0420 394 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 25 387 - -
Lal17g0420 394 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 123 339 IPR006379 -
Lal17g0420 394 TIGRFAM T6PP: trehalose-phosphatase 118 366 IPR003337 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0420 Lal-Chr17 2837743 2840201 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0420 109 339 Trehalose Biosynthesis Gene Families AT1G23870 25.000 1.92e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0420 K01087 - gmx:100788641 533.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0449 22 2933525 2937182 Lal17g0420 17 2837743 2840201 PCT
Lal6g0483 6 3081580 3084205 Lal17g0420 17 2837743 2840201 PCT
Lal17g0420 17 2837743 2840201 Lal22g0449 22 2933525 2937182 PCT
Lal17g0420 17 2837743 2840201 Lal6g0483 6 3081580 3084205 PCT