Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0397 ATGGCACTAGAGAATGTGGTTTTCGCACAAGATCAATTTAGTTATGGTTGCAATGAAGATTATTTGTACTCCTTAGTAGGAGAAAAAGAAGAAGAGAAAGTCCTTGGTATTATCAACAACAACATAGAACAAAATATCCATGCAACTACTTGGGATTCTTCTTCTACCTCAGTGTTGCAAAACGCTAAGGAACAATGGGATTATTTCCACTCTTCCCCTGAGGCTTGCACAGTGTCCACCACCACCACCACCACCGGGAGGCGTAAACGACGTCGCACTAAGAACGCCAAGAACAAAGAGGAAATTGAGAACCAGAGAATGACCCACATTGCAGTTGAGCGCAATCGAAGAAAACAAATGAATGAGTACCTCACTGTGCTTCGATCCTTGATGCCTCTTTCTTATGTTCAAAGGGGTGACCAAGCGTCTATTATTGGGGGCGCCATTAATTTTGTGAAGGAGCTAGAGCAATATTTACAGTCTATGGAGGGTCAAAAGAAAACTAAACAACCACACAAAAAATTTGGATCACTACCTTTTGCTGAGTTCTTCACATTTCCACAGTATATAACTTGTGCAAATCAGAGTAACAACAACAAATCAGGCATGATCATGGGACAGAAACAACGGGGAGTGGCAGACATAGAAGTGACCATGGTAGACAGCCATGCCAACATGAAGATATTGTCAAAGAAACGTTCTGGTCAGCTTATGAAAATGGTTGTTGGACTTCAAAGTCTTAGGCTTGGCATTCTCCACCTTAATGTTACTAATGTGGATGATATGGTACTTTACTCTGTTAGTGTAAAGGTAGAAGAAGGGTGTCAGCTTAACACCGTGGATGAAATTGCAGCAGCTGTGAATCAACTTTTACGCAAAATCCAAGAAGAATCTGCTTTCAACTGA 906 0.4128 MALENVVFAQDQFSYGCNEDYLYSLVGEKEEEKVLGIINNNIEQNIHATTWDSSSTSVLQNAKEQWDYFHSSPEACTVSTTTTTTGRRKRRRTKNAKNKEEIENQRMTHIAVERNRRKQMNEYLTVLRSLMPLSYVQRGDQASIIGGAINFVKELEQYLQSMEGQKKTKQPHKKFGSLPFAEFFTFPQYITCANQSNNNKSGMIMGQKQRGVADIEVTMVDSHANMKILSKKRSGQLMKMVVGLQSLRLGILHLNVTNVDDMVLYSVSVKVEEGCQLNTVDEIAAAVNQLLRKIQEESAFN 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0397 301 Pfam Helix-loop-helix DNA-binding domain 105 156 IPR011598 GO:0046983
Lal17g0397 301 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 104 155 IPR011598 GO:0046983
Lal17g0397 301 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 1 301 - -
Lal17g0397 301 SMART finulus 110 161 IPR011598 GO:0046983
Lal17g0397 301 Gene3D - 88 171 IPR036638 GO:0046983
Lal17g0397 301 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 104 171 IPR036638 GO:0046983
Lal17g0397 301 CDD bHLH_AtFAMA_like 107 170 - -
Lal17g0397 301 MobiDBLite consensus disorder prediction 79 101 - -
Lal17g0397 301 PANTHER MAX DIMERIZATION, MAD 1 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0397 Lal-Chr17 2666048 2669219 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0397 1 271 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 49.338 5.76e-77 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal17g0397 HLH 7.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0397 - - gmx:100789380 383.259
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0397 17 2666048 2669219 Lal17g0397 17 2666048 2669219 ECH
Lal17g0397 17 2666048 2669219 Lal21g0467 21 3323838 3326788 LSH
Lal6g0457 6 2908700 2910750 Lal17g0397 17 2666048 2669219 PCT
Lal17g0397 17 2666048 2669219 Lal6g0457 6 2908700 2910750 PCT