Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0396 ATGAATATCCAAAACCAAAAGGAAAGTTGTGCTCCTCCCAGTATTCTCATTCACACACTGTGGAAGTTTCATCGTGATTCCCATAACTGGCTTGCATTCTTTCTTCTCTTCATCCAAACCACACCGCTGATTACCGCTCAGCCGCAACCGGCACTTCCAGGACCAGTCACTACAAAAAAATCGATGGCAGGTGTTATGACAGTTGTGGCCATTTTGTTCATCATCTCAGGCTTACTTTCTCTATACACTCGAAATTGTTCCAATCGACGAACCCGAATCCGAGGCAGGCTCGACCTTGCTTTTCCAATCGGAAGCTCATGGCGTTCCGGAAGAGAACCATGTGGCCTGAACCCTGAAGTCATTGATAGCTTCCCTACTTTTCTCTACTCCAGTGTGAAAGATATCATGATTGCAAGAGAAACCCTTGCATGCGCGGTGTGCTTGGATGAGTTCAAAGACGCCGATACGCTGCGTTTAATCCCAACATGCAGCCACGTCTTCCATCCTTCTTGCATTGATGTATGGCTTGAATCTCACTCAACTTGCCCTGTTTGTCGCGCTAACCTCGTCCCAAAATCCGAGGATGCTTCATTTGTAACCATTGAGTTTCCAAATAACCAGGAACAACAACTGAATGATGCCGTTGGAGACATTGTGGATGATGACATGGAATACCCAAAGGAAAATCTGCTTAACCGAATAATACCTCGCTCACGGTCGACCGGGTTTTTATTTGATATGTTTCGACGGTCTGATTCGACCGGTCACTCGACGGTGATTGAATCGGGTGAGAATTGTGAGAGGTATACTCTGAGGTTACCAGATGAAATAAGAAAAAAGTTAGTGAACTCAACGCTGAAGCGTACAAATAGTTGCATGAGTTTTAGGAGTATGAGCAGTGGGAGAAAGGGTTTCAGAACAAGAAGCATGGGTAGGAACTATTTGCATTGCTTGCACGAGCAGTTTTGCAACGAGGAGGACCAGTGGGGTGTAACATTTACGACGCCGTTTTTAAATATAAATAGTTCGGGTGATTCAGGGAGAAAATCACCTTCTGTTCAATCATCAGAATGTTCAAATCACGTTTTTGTTGAGCGATCCTCTGATGGAATAAGCCCTGGACTCCATGCATGTAGGTAA 1140 0.4491 MNIQNQKESCAPPSILIHTLWKFHRDSHNWLAFFLLFIQTTPLITAQPQPALPGPVTTKKSMAGVMTVVAILFIISGLLSLYTRNCSNRRTRIRGRLDLAFPIGSSWRSGREPCGLNPEVIDSFPTFLYSSVKDIMIARETLACAVCLDEFKDADTLRLIPTCSHVFHPSCIDVWLESHSTCPVCRANLVPKSEDASFVTIEFPNNQEQQLNDAVGDIVDDDMEYPKENLLNRIIPRSRSTGFLFDMFRRSDSTGHSTVIESGENCERYTLRLPDEIRKKLVNSTLKRTNSCMSFRSMSSGRKGFRTRSMGRNYLHCLHEQFCNEEDQWGVTFTTPFLNINSSGDSGRKSPSVQSSECSNHVFVERSSDGISPGLHACR 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0396 379 PANTHER RING-H2 FINGER PROTEIN ATL11 30 299 - -
Lal17g0396 379 Pfam Ring finger domain 143 186 IPR001841 -
Lal17g0396 379 PANTHER RING FINGER DOMAIN-CONTAINING 30 299 - -
Lal17g0396 379 SUPERFAMILY RING/U-box 138 192 - -
Lal17g0396 379 ProSiteProfiles Zinc finger RING-type profile. 144 186 IPR001841 -
Lal17g0396 379 CDD RING-H2_PA-TM-RING 144 186 - -
Lal17g0396 379 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 192 IPR013083 -
Lal17g0396 379 SMART ring_2 144 185 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0396 Lal-Chr17 2659307 2660699 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0396 34 304 Rapid Response to Elicitors AT3G05200 36.364 1.61e-47 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0396 K10664 - gmx:100814384 277.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0396 17 2659307 2660699 Lal17g0396 17 2659307 2660699 ECH
Lal17g0396 17 2659307 2660699 Lal4g0351 4 2394070 2395017 LSH
Lal6g0455 6 2898111 2899259 Lal17g0396 17 2659307 2660699 PCT
Lal17g0396 17 2659307 2660699 Lal6g0455 6 2898111 2899259 PCT