Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0395 ATGCCCACTCAAACAGACTATTCTCCTACTCCTTCCACTATCACACTACCACTCAACCTACACTTCAATACTCATCATATTCTTCCACTACTACTACTGCTACTACTTATCCTTGTACAGTTTCCACCGCCAACAACCGCACAGTTACCGAACACACTCACACCTCCTCCGTCTGACAATACTATTTCAAATATCCAGTTCAATAAATCCATGGTCATAGGCCTCGTGATCCTGGTCGTCGTGTTCTTACTATTGGGTTTTGTTTCTATCTACACTCGCCAGTGCACGGAGCGAAGGATTAGGGGCAGACTCGACCTTTCCATCCCAATCGTCGGAAGTAACAACTGGCCACGTGGCCTAGACCCGGAGATAATTGAAACCTTCCCAACCTTTGAATACTCCACCGTGAAGGGCCTCAAGAAAGGAAAAGCAACACTAGAATGCGCCGTGTGCTTAAACGAGTTTCACGACGATGAAACGCTGCGTTTAATCCCAGTTTGTAGCCACGTGTTTCACCCTGAATGCATCGATGCTTGGTTAGTTAATCACTCCACTTGCCCTGTTTGTCGCGCCAACCTTGTTTCCACACCAAGCGAAGTTGTTCCCTCTACAACGATTCAGGTTCCGGATCAACCCGAACCGGAACTGAACCCGGTCCATGTTGATGAATTATACTGTGGAAAACAAGGTACAGTGAAGAAGGAGTCTCCGAAATTGAGTAATAATAATTCGGTTAATCAGAACCGCCCACGTAGATCAAGGTCAACTGGGTTTAGATTCATGAATTTGCTTCCACGCTCTCACTCGACCGGTCACTCGCTGGTTCAACGCGGTGAGAATTTGGAGAGGTTCACGTTGAGGTTGCCGGACGAGGTGAGGAACCAATTAGTGACGTCAACGCTTAGTTGCACGAAGAGTTTGGGCGTGGCTCTCACGCCCGAGAGTAGTGAGAGGAGGGGTTACAGAACTCGAAGTGTAGGCAGGAGCTATCTGGAGCGGTTCGGCCGGTCGGACCGGATATGGTTTAATTGGATGAGTAAGGCCGGTTCGACCTTGTCATTGAAGGGTACTGAGTTTAATAAAGATGACATGGGAGAACGATCTTCGGACCAACTATTTACTGGAAAGGAAAATGATATATGA 1143 0.4759 MPTQTDYSPTPSTITLPLNLHFNTHHILPLLLLLLLILVQFPPPTTAQLPNTLTPPPSDNTISNIQFNKSMVIGLVILVVVFLLLGFVSIYTRQCTERRIRGRLDLSIPIVGSNNWPRGLDPEIIETFPTFEYSTVKGLKKGKATLECAVCLNEFHDDETLRLIPVCSHVFHPECIDAWLVNHSTCPVCRANLVSTPSEVVPSTTIQVPDQPEPELNPVHVDELYCGKQGTVKKESPKLSNNNSVNQNRPRRSRSTGFRFMNLLPRSHSTGHSLVQRGENLERFTLRLPDEVRNQLVTSTLSCTKSLGVALTPESSERRGYRTRSVGRSYLERFGRSDRIWFNWMSKAGSTLSLKGTEFNKDDMGERSSDQLFTGKENDI 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0395 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 195 IPR013083 -
Lal17g0395 380 MobiDBLite consensus disorder prediction 356 380 - -
Lal17g0395 380 MobiDBLite consensus disorder prediction 359 380 - -
Lal17g0395 380 PANTHER RING-H2 FINGER PROTEIN ATL11 30 315 - -
Lal17g0395 380 MobiDBLite consensus disorder prediction 234 253 - -
Lal17g0395 380 Pfam Ring finger domain 147 190 IPR001841 -
Lal17g0395 380 SUPERFAMILY RING/U-box 133 196 - -
Lal17g0395 380 MobiDBLite consensus disorder prediction 232 253 - -
Lal17g0395 380 SMART ring_2 148 189 IPR001841 -
Lal17g0395 380 CDD RING-H2_PA-TM-RING 147 190 - -
Lal17g0395 380 PANTHER RING FINGER DOMAIN-CONTAINING 30 315 - -
Lal17g0395 380 ProSiteProfiles Zinc finger RING-type profile. 148 190 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0395 Lal-Chr17 2654084 2655226 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0395 21 357 Rapid Response to Elicitors AT3G05200 37.360 1.53e-58 193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0395 K10664 - gmx:100807828 331.257