Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0392 ATGGCAGAAGGAATAGAAGCAAAACAAGAGAAAACCATGAAGAAAATTCTTCTCATAATAAGTTGCACCATACTAGCCTTAGGCACCTCCTGTGGCCCAAACATGATACGTCTCTACTTCCTCCGTGGTGGCCACCGTGTTTGGCTATGCAGCTTCCTTGAATCTTGTGGCTTCCCAATCATTCTAATTCCTCTTTTCATCTCCTACATCCACCGCCGTCGCAGCGCCGCCGCCACTCAAAGCGCAAAAGTAAAGATGGTTCTTATCGAGCCACCTTTATTTTTAGCCTCTCTCGTTCTCGGTCTCATCAGCGGCCTCAACAATTTTTGCTTTGCCTTCGGCGTGGCTCGGCTTCCCGTAACCACTTCTTCTCTGATTTTAGCCACTCAACTAGCCTTCAACGCGCTCTTCTCATTCCTCTTAGTAAGGCAGAAGTTTAGGGTTTATTCTGTTAACACCATATTTTTGCTCACTGTTGCAGCGGGGATTTTGGCTATGCATTCAAGTGGGGATCGTCCTTCTGGTGAAAAGAGTAAACAATATGTGTTGGGGTTTGTTATAACAGTAATGGTTGCAGTGTTAGATGGGTTTATTTATCCTCTGGTGGAATTGGTGTACAAGAAGGTTAAACAAACTATAAATTACTCACTCGTCTTGGAGGTTCAGTTCGTTATGTGCCTGTTTGCTTCTTTCTTTAACATCATCGGAATGATCGTAAACAATGACTTTAAGTTAATCTCAAGTGAAGCAAGACAATTCGAACATGGGGAAGTTGTTTACTGCATTGTGCTGGTGGGGATAGCAATACTGTCTCAGTGTCTCCTTTTGGGAGCAATAGGGGTCGTTTTTTGTGCCTCATCTTTATTGTCCGGTGTTATAGTTGCTGCAATTTTACCTGTAACAGAAATCTTAGCGGTTATATTCTTCAAAGAAAAATTTAATGCAGAAAAGGGTGTTGCTCTGATTCTCTCCCTTTGGGGCTTTGCAACATACTTTTATGGTGAGTCAAAACATGCCAAGAAAATGAAGAAAAACGTGTCCCTAGCAGAAGCAGAGGTGCCACAAGTTCTTCTTATTTCTAATCCATGA 1089 0.4261 MAEGIEAKQEKTMKKILLIISCTILALGTSCGPNMIRLYFLRGGHRVWLCSFLESCGFPIILIPLFISYIHRRRSAAATQSAKVKMVLIEPPLFLASLVLGLISGLNNFCFAFGVARLPVTTSSLILATQLAFNALFSFLLVRQKFRVYSVNTIFLLTVAAGILAMHSSGDRPSGEKSKQYVLGFVITVMVAVLDGFIYPLVELVYKKVKQTINYSLVLEVQFVMCLFASFFNIIGMIVNNDFKLISSEARQFEHGEVVYCIVLVGIAILSQCLLLGAIGVVFCASSLLSGVIVAAILPVTEILAVIFFKEKFNAEKGVALILSLWGFATYFYGESKHAKKMKKNVSLAEAEVPQVLLISNP 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0392 362 SUPERFAMILY Multidrug resistance efflux transporter EmrE 92 168 - -
Lal17g0392 362 Pfam Purine nucleobase transmembrane transport 16 341 - -
Lal17g0392 362 PANTHER PURINE PERMEASE 2 7 349 - -
Lal17g0392 362 PANTHER OS09G0467300 PROTEIN-RELATED 7 349 IPR030182 GO:0015211|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0392 Lal-Chr17 2620361 2622064 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0392 13 361 Organic Solute Cotransporters AT1G28230 55.367 5.45e-128 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0392 - - gmx:100803818 455.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0392 17 2620361 2622064 Lal17g0392 17 2620361 2622064 ECH
Lal18g1166 18 14544431 14546392 Lal17g0392 17 2620361 2622064 PCT
Lal17g0392 17 2620361 2622064 Lal6g0095 6 573697 575632 PCT