Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0387 ATGGAGAAGAACATTGAATTTGGCGAGTCCCAAAACCAAGTTCAGATGGAAATGGAGATCCAAACTGCACCACCGCCACAAAATGACTCACTCAACAACTCTGAGGCACTGACCAACACTATTGCCATCACTAACAATGATGCAATCACTATCCCACCCGGTCATAGAGCTGGTGCTGTCATATACAAAGAATGTCAGAAGAACTTTGCTATAAGCATTGGTAGCTATGTCTTTGACGGTTGTGGCGAGTTTGTAGGGGCCGGAAAAGAAGGCACTATGGAGGCAAATATTTGTGCAGCATGCAACTGCCACCGTAATTACCACCGGAAGGAGATCAACGGTGTCTACAACATGAACTCATACCTGCACCAGCCTTGGCCTCAGCCACAACCACCGTTGCACACTTGCTGCCATCATATGCTACCACCACCTCCCATCGGTTACCACCGCCACCACGTAGTGGCAGCTTCACCGGTGTCCCAACATCGCCCCACCGCACCCGGTGGAGAATTCAGCTGTGAAGAGGGGGACATGTTGAACCGTAACAACAACGATGATGGAGGGAAAGTGAAGAAGAGGTTTAGGACTAAATTCACCACAGAGCAGAAGGAGAAGATGCTTGCATTTGCTGAGAAACTTGGATGGAAAATCCATAAACATGATACTACTGTTGTGGAGCAATTCTGTGCTGAGACTGGTGTGAAGAGACAAGTGCTGAAGGTGTGGATGCACAACCACAAAGGGAAGAAATCTTAG 756 0.4815 MEKNIEFGESQNQVQMEMEIQTAPPPQNDSLNNSEALTNTIAITNNDAITIPPGHRAGAVIYKECQKNFAISIGSYVFDGCGEFVGAGKEGTMEANICAACNCHRNYHRKEINGVYNMNSYLHQPWPQPQPPLHTCCHHMLPPPPIGYHRHHVVAASPVSQHRPTAPGGEFSCEEGDMLNRNNNDDGGKVKKRFRTKFTTEQKEKMLAFAEKLGWKIHKHDTTVVEQFCAETGVKRQVLKVWMHNHKGKKS 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0387 251 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 55 247 - -
Lal17g0387 251 MobiDBLite consensus disorder prediction 171 190 - -
Lal17g0387 251 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 55 247 - -
Lal17g0387 251 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 62 111 IPR006456 -
Lal17g0387 251 SUPERFAMILY Homeodomain-like 182 249 IPR009057 -
Lal17g0387 251 Gene3D - 177 251 - -
Lal17g0387 251 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 191 247 IPR006455 -
Lal17g0387 251 Pfam ZF-HD protein dimerisation region 60 112 IPR006456 -
Lal17g0387 251 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 62 112 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0387 Lal-Chr17 2590011 2590766 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0387 60 247 ZF-HD Transcription Factor Family AT4G24660 46.632 1.05e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lal17g0387 ZF-HD_dimer 3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0387 - - lang:109327886 296.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0387 17 2590011 2590766 Lal21g0462 21 3293813 3294559 LSH
Lal17g0387 17 2590011 2590766 Lal4g0342 4 2296222 2296977 LSH
Lal22g0424 22 2761734 2762828 Lal17g0387 17 2590011 2590766 PCT
Lal17g0387 17 2590011 2590766 Lal22g0424 22 2761734 2762828 PCT