Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0375 ATGACAGTGGACCCAAACCCTCCAAAATCCATATCTCTCTCTCTCTTTTATTACAATAAACCTCCAAAATCCCAAACCCTGCACCAATCAAAGACTAGAGATAGAGACTTTGAAGTGATTCAAAATTCAGAAGCAATGAAAGGAGAATATGTAGATGAACACACTGAACCTGAAACACCCAACATCTTCTCAAACCTTAACCATTCTCAACCTCAACACACCCCTTTCCCCAACCACCCTTTCCAACCCTCCACCACCGTCGACGGTGCCACCATTGAGGTCGTTCGCCGCCCAAGGGGTCGCCCACGTGGATCCAAAAACAAGCTCAGGCCACCTCTTATCATAACCCGAGACCTGGAACCTGCTATGAGCCCTTACATTCTACAAGTTTCTGGCGGAAACGACGTCGTTGAAGCCATATCAGGGTTCAGTCGTCAAAAGAATATGGGATTATGTGTCTTAACTGGTTCTGGAACCGTCGTTAACGTCACTCTCCGTCAACCATTAACGACTCCTGCAGCCACCGTTACTTTTCACGGCCGTTTCGATATTCTCTCTATTTCCGCCACCTTCTTTCCACAACACCAAGGTTCTTCGAATTCACCACCGATGCAGAACAGTTTCTCTATCTCCCTCGCCGGACCTCAGGGTCAGATCATGGGAGGAATGGTTGCCGGAAAGTTGGTCGCCGCTGGGACTGTGTTCGTGATTGCTGCTTCGTTCAATAACCCTTTATATCATAGGCTGCAGAAGGAGGAAGATGGAGGGAATTCAGTCTCCGGGAGTGGGGAAGGACAGTCAGCGCTGGTGTCCGGTGGCGGTGGCGGCGGAGATGGACAAGGAGAGTCGTGTGGGGTGTCTATGTACAACTGTCAATTGCCTTCTGATGTGATTTGGGCTCCAACCGCTAGACCACCACCCTACTGA 927 0.4973 MTVDPNPPKSISLSLFYYNKPPKSQTLHQSKTRDRDFEVIQNSEAMKGEYVDEHTEPETPNIFSNLNHSQPQHTPFPNHPFQPSTTVDGATIEVVRRPRGRPRGSKNKLRPPLIITRDLEPAMSPYILQVSGGNDVVEAISGFSRQKNMGLCVLTGSGTVVNVTLRQPLTTPAATVTFHGRFDILSISATFFPQHQGSSNSPPMQNSFSISLAGPQGQIMGGMVAGKLVAAGTVFVIAASFNNPLYHRLQKEEDGGNSVSGSGEGQSALVSGGGGGGDGQGESCGVSMYNCQLPSDVIWAPTARPPPY 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0375 308 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 17-RELATED 41 307 - -
Lal17g0375 308 MobiDBLite consensus disorder prediction 252 281 - -
Lal17g0375 308 Gene3D - 124 262 - -
Lal17g0375 308 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 41 307 IPR014476 GO:0003680
Lal17g0375 308 SUPERFAMILY AF0104/ALDC/Ptd012-like 122 255 - -
Lal17g0375 308 CDD DUF296 125 241 IPR005175 -
Lal17g0375 308 ProSiteProfiles PPC domain profile profile. 120 262 IPR005175 -
Lal17g0375 308 Pfam Plants and Prokaryotes Conserved (PCC) domain 125 243 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0375 Lal-Chr17 2506137 2507063 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0375 86 308 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 64.957 1.74e-95 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0375 - - gmx:100788098 349.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0375 17 2506137 2507063 Lal17g0375 17 2506137 2507063 ECH
Lal17g0375 17 2506137 2507063 Lal4g0336 4 2235842 2236684 LSH