Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0374 ATGGCTACTTCACTTTCTTTCAATATCACTTTCTCTTTTTACTACTTCCTCTTCCTCTTTCTACTCAATTTTCAACACTCCAAACAACAACAACAACAAACCCCATATCATGATCTCAATGATACCCTCATCGCTGCAAAATCTCCAGCACCCTTAGGGAAAACATCTTCTTCGTTTAAACCAGGAGTAGCAGTTGTTGTTGCTGTTTTAACAACAATGTTTTCTCTTACCTTTCTTCTCCTTCTTTACATCAAACACTGCAACAATGTTCCCAATCATCATAACAACATAACTACTAGTTATAGAAAAAACTCAGGCATTGACCGTTCCGTTATAGAATCATTACCCATTTTCAGATTCAGGTCGTTGATGGGCCAAAAACATGGGTTGGATTGCGCAGTTTGTCTCAACAAGTTCGAACCCAGTGAAGTTCTTCGGTTGTTACCCAAATGCAAGCACGCGTTTCATGTTGAATGTGTAGACACATGGCTCGAGGCACATTCAACTTGTCCGTTGTGTCGTTATAGGGTAGATCCAGAAGATATTTTCTTACTCCATCATGATACAAAAATTCCACACCAAAATGAAGAACATGTTGTAGATATTGAGAAAGAAACAAACCCATCATCGAAAGTTGTTGAAGATTCAGAAAAAACTCGGAGAATATCAGGGAGACACTCATCGGTAGAAAAAGGTGGGATTTTTCAGAATATACCGGAACTGAAAACGGCATCGTTTTTTAGAAGGTCGCTGGACAGTGCAAGAGGGAGAAAAAAGAACGAAAATGGCGTAGTTGGTGAAAGAAAAGACGAGATGTTAATGTTATTAGAACAGAGGAATATAGTGTGTTTGAGATCAAGAGATGAACGGTGGAGTGATGTGGAACCGTTGGATATGTTGTATCTGACGTCAGAGATGATAATAAGTGAACGAGAACAAGGTTTATAA 948 0.3882 MATSLSFNITFSFYYFLFLFLLNFQHSKQQQQQTPYHDLNDTLIAAKSPAPLGKTSSSFKPGVAVVVAVLTTMFSLTFLLLLYIKHCNNVPNHHNNITTSYRKNSGIDRSVIESLPIFRFRSLMGQKHGLDCAVCLNKFEPSEVLRLLPKCKHAFHVECVDTWLEAHSTCPLCRYRVDPEDIFLLHHDTKIPHQNEEHVVDIEKETNPSSKVVEDSEKTRRISGRHSSVEKGGIFQNIPELKTASFFRRSLDSARGRKKNENGVVGERKDEMLMLLEQRNIVCLRSRDERWSDVEPLDMLYLTSEMIISEREQGL 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0374 315 SUPERFAMILY RING/U-box 111 179 - -
Lal17g0374 315 CDD RING-H2_EL5_like 131 174 - -
Lal17g0374 315 SMART ring_2 132 173 IPR001841 -
Lal17g0374 315 ProSiteProfiles Zinc finger RING-type profile. 132 174 IPR001841 -
Lal17g0374 315 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 24 311 - -
Lal17g0374 315 Pfam Ring finger domain 131 174 IPR001841 -
Lal17g0374 315 PANTHER RING-H2 FINGER PROTEIN ATL43 24 311 - -
Lal17g0374 315 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 181 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0374 Lal-Chr17 2502805 2503752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0374 56 310 C3H Transcription Factor Family AT5G05810 48.344 7.67e-69 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0374 K19041 - jre:109009455 258.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0374 17 2502805 2503752 Lal4g0334 4 2225308 2226743 LSH