Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0371 ATGGCCTACCCGGGTTCGATGCAAATGTCTCCTGACTTCAGGCTCCACACTACTAGTGGATTCTGTAATTCCCATCGCAATCCGATGGGGTTTGGTCGACTACATTTGGTTACCGTAAACCTTTCACCACTTAGTTTGAATAAACAGAAGCAGGATTCTTCAGCACTTCATCTTTTAAGTAGAGTACCACCAATAAGGCATGTGCCTTCCAGATATAACATTTTTATATGTCGATCTGTCCTGATACCAGATGGAGGGAGTGTGACTCCACTCCTGAAATCTTCTGCTGTTATTTTAACAAGGTCATATGATGCTTTACGAGGAAGCCCTGTTTTGCTTCGGTTAATTCCAGCACTCGGTCTCATTGCCTTTACTATTTATGGTCTTGAGCCACTCCTACGCCTCAGCAGAATTCTATTTCTTCAAAGAACGGATAGTAGCTGGAAGAAAAGTAGTTCGCGATATGTTATGACATCATATTTTCAGCCTTTGCTGTTGTGGTCTGGAGCAATGCTCATATGCAGGGCATTAGATCCATTAGTCCTGCCATCAGAGGCCAGCCAGGTTGTGAAGCAGCGGCTGCTGAATTTTGTTAGATCTTTGTCAACAGTGATTTCATTTGCTTACTGTTTATCAAGCGTAATTCAACAAGCACAAAAATTCTTTATGGAGGCAAATGACTCCAGCAGTGATGCAAGAACTATGGGCTTTGATTTTGCTGGGAAAGCTGTATATTCAGCTGTATGGGTTGCTGCCGTTTCATTGTTCATGGAGTTGCTAGGTTTCTCCACGCAGAAGTGGTTAACTGCTGGTGGTTTGGGCACTGTATTGCTCACACTTGCAGGTCGTGAGATATTTACGAACTTTCTTTCAAGTATAATGATACATGCAACTCGGCCATTTATTATAAATGAGTGGATTCAAACAAAGATTGAAGGATATGAAGTTTCTGGTACAGTTGAGCATGTGGGATGGTGGTCACCGACTATTGTGAGAGGTGATGATCGTGAGGCAGTTCATATTCCTAATCACAAGTTCACTGTAAATGTGGTAAGAAATTTGAGTCAGAAATCTCATTGGCGCATCAAGAGTTACATTGCTATCAGTCACTTGGATGTGAACAAAATTAATAATATTGTAGCTGATATGCGCAAGGTTTTGTCTAAGAATCCTCAAGTAGAGCAGCAAAGATTGCACAGAAGGGTTTTTCTAGAGAATGTCAATCCCGAAAATCAGGCTCTTATGATATTAATATCTTGTTTTGTGAAAACCTCACATTTTGAAGAGTACCTCTGCGTTAAGGAGGCAATCCTCTTGGATCTTCTCAGAGTTGTTAGTCATCATCGAGCTCGTTTGGCCACTCCCATACGCACAGTTCAGAAAATATACGGTGAGGCTGATTTGGAAAATATACCCTTTGGGGACACCATTTTCAGTCGATCCAGAGCAGCAGCAAATCGTTTCTTACTGATAGAACCACCATATAAAGTTAATGGTGATGATAAAGTCAAGCCTTCGACTCGTTCAACTCGTACAAATGAGGAAAAAGATGGCAAGATTGATGAAACCTCAGCATCTGATTCCAAAGGAGATGACAATTCTTCAGTGACATCAGCCTCATCACCTGGTGTAAACTCAAAGGATAAATCCAAGTCAGTTTCTGAAGCCCAAATTCAGCAGAATATGGGCTCTGATAGTTCAGTTGACAAGAACCCCAAAACCTTGCAGCCTAAAAAGGATAGTGCAGGAGATGCAGGGAAGGGAACTTCAGTTCCATCATCTAAAAACCTTGCACAAACTCCTGTGCCTGAAGTTTCTCCTGTGGCTTCCCATGAGTCTATCCAAGGACAGACTGCTTTTGCTACTTCACTGCCAAAGCAAGAGGAAGAGAGATCTTCTGTGTCTTCATCATCCGAGAAGACCCCAAAAACCTTGCATCCTAAAAAGGAAAGTGGAGGAGATGCTGGAAAGGGAACTACAGTTCCTGTACCTGAAAATACTTCCCCTGAATCTAGCCCGGGTGTGATCGCTTCTGCTACTTGTTCGCAGCCAAAACAAAATGAAGATAAGTCTTCCCTGTCTTCATCATCAGAGAAGACCTCCAAAATCTTGCAGCCTAAAAAGGGAAGTGGAGGAGATCCTGGAAAGGGAATTATGGTTCCTGTATCCAAAAATCCAGTACAAGGTGCTGTGCCTGAAGTTTCTCCTGCTACTACTTCCCATGAGTCTAGCAGGGTAGACACAGCGTCTGCTATTTCTTCACAGTCAAAGCAAGATGAAGAGAAATCATCTGTGTCTTCATCATCAATTAGACCTTCCATGGAAGAAAATATTCTTCTTGGTGTTGCCCTAGAAGGCTCAAAACGAACGCTTCCGATTGAGGAAGACACTCCATCTCCTATCCCTGCAGAGTCGCAAGAATTTGCTGTCCAACGAAATGGAAGTGGACCCCCTGCTAGCAAGGATAAGAAAGATGGTCAGATGTCTTCATTTCCAACAGCTAAGCAAAATGACTAG 2517 0.4271 MAYPGSMQMSPDFRLHTTSGFCNSHRNPMGFGRLHLVTVNLSPLSLNKQKQDSSALHLLSRVPPIRHVPSRYNIFICRSVLIPDGGSVTPLLKSSAVILTRSYDALRGSPVLLRLIPALGLIAFTIYGLEPLLRLSRILFLQRTDSSWKKSSSRYVMTSYFQPLLLWSGAMLICRALDPLVLPSEASQVVKQRLLNFVRSLSTVISFAYCLSSVIQQAQKFFMEANDSSSDARTMGFDFAGKAVYSAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSIMIHATRPFIINEWIQTKIEGYEVSGTVEHVGWWSPTIVRGDDREAVHIPNHKFTVNVVRNLSQKSHWRIKSYIAISHLDVNKINNIVADMRKVLSKNPQVEQQRLHRRVFLENVNPENQALMILISCFVKTSHFEEYLCVKEAILLDLLRVVSHHRARLATPIRTVQKIYGEADLENIPFGDTIFSRSRAAANRFLLIEPPYKVNGDDKVKPSTRSTRTNEEKDGKIDETSASDSKGDDNSSVTSASSPGVNSKDKSKSVSEAQIQQNMGSDSSVDKNPKTLQPKKDSAGDAGKGTSVPSSKNLAQTPVPEVSPVASHESIQGQTAFATSLPKQEEERSSVSSSSEKTPKTLHPKKESGGDAGKGTTVPVPENTSPESSPGVIASATCSQPKQNEDKSSLSSSSEKTSKILQPKKGSGGDPGKGIMVPVSKNPVQGAVPEVSPATTSHESSRVDTASAISSQSKQDEEKSSVSSSSIRPSMEENILLGVALEGSKRTLPIEEDTPSPIPAESQEFAVQRNGSGPPASKDKKDGQMSSFPTAKQND 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0371 838 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC 1 670 - -
Lal17g0371 838 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC 682 830 - -
Lal17g0371 838 Pfam Mechanosensitive ion channel 242 449 IPR006685 GO:0016020|GO:0055085
Lal17g0371 838 MobiDBLite consensus disorder prediction 499 838 - -
Lal17g0371 838 MobiDBLite consensus disorder prediction 587 603 - -
Lal17g0371 838 Gene3D - 301 356 IPR023408 -
Lal17g0371 838 MobiDBLite consensus disorder prediction 499 528 - -
Lal17g0371 838 MobiDBLite consensus disorder prediction 632 653 - -
Lal17g0371 838 MobiDBLite consensus disorder prediction 661 704 - -
Lal17g0371 838 MobiDBLite consensus disorder prediction 732 774 - -
Lal17g0371 838 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 670 IPR045042 -
Lal17g0371 838 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 682 830 IPR045042 -
Lal17g0371 838 SUPERFAMILY Sm-like ribonucleoproteins 285 355 IPR010920 -
Lal17g0371 838 MobiDBLite consensus disorder prediction 610 631 - -
Lal17g0371 838 MobiDBLite consensus disorder prediction 529 571 - -
Lal17g0371 838 Gene3D - 165 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0371 Lal-Chr17 2474793 2482216 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0371 14 588 Mechanosensitive Ion Channel Family AT1G58200 59.694 0.0 702
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0371 K22047 - gmx:100796022 959.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0371 17 2474793 2482216 Lal17g0371 17 2474793 2482216 ECH