Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0359 ATGATGAACTTCACCAATCACTTCCTATTGTTCATGATGCTTCAGTTCATCCTTGTTTTGGGTGGTGTTACTAACCCAGGGGTACAGTTGAAAATTCAAGATAAATATGTTGTAATGGATAATGGCATAGTTCAGGTTACTATAGCAAACCCTGAAGGATATGTTACTGGAATCCAATATAATGGGGTCGATAATTTGCTCCAAGTTACTAACAATGAATCTGACAGAGGGTACTGGGATATGGTATGGGATGAAGGTGGTAATAAAACAACAGCAAAAGGAAAAAAAGGAAAAGGAAGATTTGACAGAATGGAAGCTACAAATTTTAAGGTAATAGTGGAACATGAAGAACAAGTTGAATTATCATTCACCAGAATTTGGAATTCTTCTCTAGAAGGGAATCTTGCACCTGTGAATATTGATAAAAGGTTTATATTGCTTCGTGGTTCATCTGGGTTTTATACCTATGCAATTTATGAACACTTGAAGGAATGGCCAGCATTTGATATTGACAATACTAGGGTAGCTTTCAAGCTTAGGAAAGACATGTTCCATTACATGGTAGTAGCAGACAATAGACAAAGATTTATGCCTCTGCCTGATGATCGTGAAATTGGAAGAGGTGAAGCTTTAGATTATCCAGAAGCTGTTCTACTTGTGAATCCAGTGGAACCTGAGTTCAAGGGAGAGGTTGATGATAAATATCAATACTCTTGCGAGAGCAAAAATAATCGGGTTCATGGCTGGATATCCATGAACTCATCTCAACCCACTGGGTTTTGGGTAATTACACCAAGCCCTGAATTCAGATCCGCTGGGCCCCTGAAACAATACATTGGTTCTCACGTTGGCCCCACTTCACTTTCTGTATTTCATAGCACGCATTATTCAGGATTAGATTTGATAATGAAATTTGGGCCTAATGAGTCATGGAAGAAAGTTTATGGGCCCATATTCATTTACCTTAATTCTCTATCTAATGGAGAAAGCCCAATCACGTTATGGAAGGATGCTAAACAACAGATGGTCATTGAAAGTGAGAGTTGGCCCTATACATTTCCAGCTTCACAGGAATTCCTCTCAGCTAAGCAACGAGGTAAAGTTGAAGGTAGATTGCTCGTTCGAGACAGGTACATCAATAATGCATCCATCCCAGTTAGCGGTGGTTACGTGGGATTAGCATTCCCTGGAGATGCTGGATCTTGGCAAAGAGAATCAAAGGGTTATCAATTTTGGACCACTACCGATGACAAAGGCTATTTTTCAATTATTAACATACATCCAGGAACCTATAATCTCTACTCTTGGGTCACTGGATACATTGGTGATTATAAATATGGTCCCATCATTAACATAACCTCAGGTTCTCAAATTAATGTGCGTGAGCTTGTTTATGAGCCACCAAGAGATGGTCCTACTTTATGGGAAATTGGCATCCCTGATCGTTTAGCTGCTGAGTTCTATGTTCCTGATCCAAATCCTAAATATATCAACAAACTCTATCTTAACCATTCAGATAGGTTTAGACAATATGGGTTGTGGGAGAGATATGCTGATTTGTATCCAAATGAAGACCTAGTTTACACCGTTGGTGTCAGTGACTACCGAAAAGATTGGTTTTTTGCTCAAGTCTCAAGGAAGAAAGATAATAACACATACCAAGCAACCACATGGAAAATTAATTTCAATCTTGATCAAGTGCATACCAATGGAACCTATAAGCTGCGAGTGGCTTTGGCATCTATACACCATGCAGATCTACAGGTTCGGATAAACAATTCAGAAGCAAACCCACCTTTATTTTCAAGTGGACAAATTGGATCAGAGAATACCATAGCAAGACATGGAATTCATGGGCTCTATTGGCTATTCAGCATTCAAGTACAAGGCACTCTTCTTGTGAAGGGAAACAATACCTTATTTCTAACACAACCAATTAACACAAGTCCTTTTCAAGGAATTTTGTATGATTATATTCGTTTAGAAGGACCCAGTACTGGTCAAAACTAA 2010 0.3886 MMNFTNHFLLFMMLQFILVLGGVTNPGVQLKIQDKYVVMDNGIVQVTIANPEGYVTGIQYNGVDNLLQVTNNESDRGYWDMVWDEGGNKTTAKGKKGKGRFDRMEATNFKVIVEHEEQVELSFTRIWNSSLEGNLAPVNIDKRFILLRGSSGFYTYAIYEHLKEWPAFDIDNTRVAFKLRKDMFHYMVVADNRQRFMPLPDDREIGRGEALDYPEAVLLVNPVEPEFKGEVDDKYQYSCESKNNRVHGWISMNSSQPTGFWVITPSPEFRSAGPLKQYIGSHVGPTSLSVFHSTHYSGLDLIMKFGPNESWKKVYGPIFIYLNSLSNGESPITLWKDAKQQMVIESESWPYTFPASQEFLSAKQRGKVEGRLLVRDRYINNASIPVSGGYVGLAFPGDAGSWQRESKGYQFWTTTDDKGYFSIINIHPGTYNLYSWVTGYIGDYKYGPIINITSGSQINVRELVYEPPRDGPTLWEIGIPDRLAAEFYVPDPNPKYINKLYLNHSDRFRQYGLWERYADLYPNEDLVYTVGVSDYRKDWFFAQVSRKKDNNTYQATTWKINFNLDQVHTNGTYKLRVALASIHHADLQVRINNSEANPPLFSSGQIGSENTIARHGIHGLYWLFSIQVQGTLLVKGNNTLFLTQPINTSPFQGILYDYIRLEGPSTGQN 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0359 669 Pfam Polysaccharide lyase family 4, domain III 473 661 IPR029411 -
Lal17g0359 669 Pfam Polysaccharide lyase family 4, domain II 387 459 IPR029413 -
Lal17g0359 669 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 2 663 - -
Lal17g0359 669 SUPERFAMILY Starch-binding domain-like 362 460 IPR013784 GO:0030246
Lal17g0359 669 CDD RGL4_N 30 324 - -
Lal17g0359 669 Pfam Rhamnogalacturonate lyase family 28 231 IPR010325 -
Lal17g0359 669 CDD RGL4_M 364 463 IPR029413 -
Lal17g0359 669 Gene3D - 361 461 - -
Lal17g0359 669 Gene3D - 28 332 IPR014718 GO:0030246
Lal17g0359 669 PANTHER RHAMNOGALACTURONATE LYASE B-LIKE PROTEIN 2 663 - -
Lal17g0359 669 SUPERFAMILY Galactose mutarotase-like 40 326 IPR011013 GO:0003824|GO:0005975|GO:0030246
Lal17g0359 669 SUPERFAMILY Galactose-binding domain-like 470 662 IPR008979 -
Lal17g0359 669 Gene3D - 471 662 - -
Lal17g0359 669 CDD RGL4_C 475 662 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0359 Lal-Chr17 2360445 2366520 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0359 28 665 Polysaccharide Lyase AT1G09890 64.019 0.0 857
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0359 K18195 - gmx:100786488 1093.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0359 17 2360445 2366520 Lal17g0359 17 2360445 2366520 ECH