Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0356 ATGGAGCTCTACGACCATGATTTGTTGGAGGAGTTAATGGCTCTAAGAAGAGAAACATGGGATAGTATTCCAAGCACAGAAGAAAATCAGTTATTCTCTAATGGCTATAGTTTTGATCAAAACTCTTTACCTTTTCTCCCAAACAACACTTCTTGTGGTCAAGAATTTCCTCCAAGTTACAACAATGACTACAACACCTTCAGTGAAATCTATGGCTCTTTACTTGATGAACCATCAGCACCACAGGTTCTTGATTCATATTATAACACATTCCATATTCCACACAACACCCCTCCATTTCTTGCTCAAGAAGATTTCCCATTGTCCCTGATGGAAGAAGAGGATAATACAGGTTTGCTTGGTGAAGAGCTTCAGAATTTGGACTTGCAAACCACATGCAAAATGGAACCAACACAATCACTAGAAAATCCCATTTTCAACATGGAAACAGGTCTAGAAAGAAAGAATCAAGTAAAGAAGCTCCAGGGGCAACCCTCCAAGAATCTTATGGCTGAAAGGAGAAGAAGAAAGAGGTTAAATGACCGCCTATCAATGCTAAGGTCAATTGTCCCTAAGATAAGTAAGATGGACAGAACATCTATTGTTGGAGACACTATTGATTACATGAAAGAGCTTCTGGAGAAGATCAACAAATTGCAACAAGAAATAGAAGTAGATGCAAATATGGCTGGCATTTTCAAAGATGTAAAGCCTAATGAAATCTTGATTAGAAATTCTCCTAAGTTTAAGGTGGAGAGGAATTTGGACACCAGGGTTGAAATTTGTTGTGCTGGGAAGCCAAGCTTGTTGCTTTCTACATTAAAGACCCTTGAAGGATTAGGCTTAGAGATTCAACAATGTGTTATTAGCTGTTTCAATGACTTCTCAATGCAGGCTTCTTGCACTGAGGAATTGGAGCAAAGGACAACGTTGAGTTGTGAAGACATAAAGCAAGCATTATTTAGAAGTGCAGGATATGGAGGAAACTAG 990 0.3879 MELYDHDLLEELMALRRETWDSIPSTEENQLFSNGYSFDQNSLPFLPNNTSCGQEFPPSYNNDYNTFSEIYGSLLDEPSAPQVLDSYYNTFHIPHNTPPFLAQEDFPLSLMEEEDNTGLLGEELQNLDLQTTCKMEPTQSLENPIFNMETGLERKNQVKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSIVGDTIDYMKELLEKINKLQQEIEVDANMAGIFKDVKPNEILIRNSPKFKVERNLDTRVEICCAGKPSLLLSTLKTLEGLGLEIQQCVISCFNDFSMQASCTEELEQRTTLSCEDIKQALFRSAGYGGN 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0356 329 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 163 212 IPR011598 GO:0046983
Lal17g0356 329 SMART finulus 169 218 IPR011598 GO:0046983
Lal17g0356 329 Gene3D - 154 227 IPR036638 GO:0046983
Lal17g0356 329 Coils Coil 209 229 - -
Lal17g0356 329 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 167 225 IPR036638 GO:0046983
Lal17g0356 329 Pfam Helix-loop-helix DNA-binding domain 169 212 IPR011598 GO:0046983
Lal17g0356 329 PANTHER DNA BINDING PROTEIN 3 328 - -
Lal17g0356 329 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 3 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0356 Lal-Chr17 2332336 2337025 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0356 149 328 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 63.587 6.50e-67 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal17g0356 HLH 3.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0356 - - gmx:100784380 505.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0356 17 2332336 2337025 Lal17g0356 17 2332336 2337025 ECH
Lal17g0356 17 2332336 2337025 Lal4g0312 4 2036057 2037934 LSH