Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0353 ATGTCTCTGCCGGGGCTCGGTGTTGGGGAGGAGGGAAAGAGTAATGTGATTTTGTTGGTTTCATCAACAACCAAAGAAAGTGTGTGTCTCAAGAGCTTAGAACTAAAAGAACACAACTACATGGGCTTATCTGATTGTTCTTCTGTGGATAGCTCAGTTCCTTCATTCTCAGATGAGAGTAAAAGTAATCTGAACCTGAAAGCCACAGAACTCAGGCTTGGCCTTCCAGGATCTCAGTCACCTGAAAGAGATTATGATCTTTGCTTAAGAAGCTCAACTCAATTTGATGAAAAGCCTCTTTTTCCTTTGCACCCTTCATCCGACGATCATCATTCCTCAGCAAAAATTGCTATTTTGGGTAACAAAAGAGGGTTCTCAGATGCCATGAATGATTTCTCAGAGGGTAAATTTGTTGTCAATTCCGAGACTGCTACGATACTTTCTCCTAGGCCTTCTTCTAACTTGGGATTAAAACCTGGTCCTGTGCTTGAGAGTGTTGCGCCTCAACAAGCCAAAATGAAAGAATTAGCAACAGCAAAGGTGGGACTCGAGAGGCCTCTTGCTCTTAATGAAACCAAACCGAGTCTTAATGGTTCTGCAAATAATAATAGCAGTGCACCGGCTACCAAGGCTCAAGTTGTAGGGTGGCCTCCTATAAGATCATTTAGGAAAAATTCATTGGCAACTAATTCCAAGAACACTGAAGAAGTAGACGGTAAACCGGGGTCTGTTGCACTGTTCATCAAAGTCAGCATGGATGGTGCTCCGTATTTAAGGAAAGTAGACTTGAAGAATTACTCTGCATATCCAGAATTATCTTCTGCTCTAGAGAAAATGTTCAGCTGTTTTACTATAAGTCAATTTGGATCTCATGGAACTCTCGGAAGGGAGATGATGAATGAAACCAAACTGAAGGATCTTCTTCATGGCTCGGAATATGTTCTTACTTACGAGGACAAAGATGGGGACTGGATGCTTGTTGGTGATGTTCCCTGGGAGATGTTTACTGAAACATGCAGGAGGATGAGGATCATGAAGAGTTCTGATGCCATTGGTCTAGCTCCGCGAGCTGTTGAAAAAATCAAGTGCAGGAACTAG 1098 0.4262 MSLPGLGVGEEGKSNVILLVSSTTKESVCLKSLELKEHNYMGLSDCSSVDSSVPSFSDESKSNLNLKATELRLGLPGSQSPERDYDLCLRSSTQFDEKPLFPLHPSSDDHHSSAKIAILGNKRGFSDAMNDFSEGKFVVNSETATILSPRPSSNLGLKPGPVLESVAPQQAKMKELATAKVGLERPLALNETKPSLNGSANNNSSAPATKAQVVGWPPIRSFRKNSLATNSKNTEEVDGKPGSVALFIKVSMDGAPYLRKVDLKNYSAYPELSSALEKMFSCFTISQFGSHGTLGREMMNETKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTETCRRMRIMKSSDAIGLAPRAVEKIKCRN 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0353 365 MobiDBLite consensus disorder prediction 192 210 - -
Lal17g0353 365 PANTHER AUXIN-INDUCED PROTEIN 21 359 - -
Lal17g0353 365 MobiDBLite consensus disorder prediction 192 211 - -
Lal17g0353 365 SUPERFAMILY CAD & PB1 domains 243 346 - -
Lal17g0353 365 Pfam AUX/IAA family 69 356 IPR033389 -
Lal17g0353 365 ProSiteProfiles PB1 domain profile. 245 347 IPR000270 GO:0005515
Lal17g0353 365 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 21 359 IPR003311 GO:0005634|GO:0006355
Lal17g0353 365 Gene3D - 242 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0353 Lal-Chr17 2310730 2315317 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0353 230 350 B3 DNA Binding Superfamily AT2G46530 31.405 3.26e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lal17g0353 AUX_IAA 1.9e-89 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0353 K14484 - gmx:100815447 536.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0353 17 2310730 2315317 Lal17g0353 17 2310730 2315317 ECH