Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0344 ATGCAGTTTTCATCTGCATCCCTCTACTGGAGTATAAACATAAAGCCTCTTTATACCAAAGATATATATGTTCACTTCTCCTATTACTACTACAGCAACAAGAACCTGCTTTTTCATCCCTTAATCCTCGTCACTGCTATAACAATTAGTGATCCACTACTCCAACCATTTCATCTTATATACTCCTCTTACTCATTTCATTCTTTGCAACATTTACACTCACCACAAACAACCATAAAAACAACCCTTCTTCTCTCTTTTTTCCCTCTCTCAAACAACATGAAACATCTATTCATGTCCCTATTTGTTATTGGAGTAATGATTATTATTTCCATTTCACAAGTTATGAGTAGTACAAACCAATCTCAGTTTTTCTCTCTTATGAAGGAGTCTCTTTCAGGAAACTACCCTTTGGTTTGGAATGATGGAAATAAATCTGTGTGTCACTTCACTGGAGTTGCATGCAATAACAAAGATGAAGTTATCAACCTTGACCTTTCAGGTTGGTCAATTTCAGGGAATTTCCCTTCAGATATATGCTCTTACCTGCCAAACTTGCATGTCCTCAATCTTGGCCACACCAAGCTCAATTTCAATACACACAGCATAACCAATTGTTCTCACTTGGAAGAGCTTAACATGAATCACATGTACCTCACAGGAACTCTACCAGATTTCTCACCTTTGAAATCTCTTAGGATACTTGACTTGTCCTACAATCTATTCACTGGTGAATTCCCCCTGTCAGTGTTTAACCTTACCAATCTTGAAGTTTTAAACTTCAATGAAAATGGAAGGTTCAACCTATGGCAGTTACCAAATAATATAGACAGGCTGAAAAAACTGAAGTCTATGATCTTGACAACATGTATGGTTTCTGGCCAAATTCCACCAATTATAGGGAACATCACTTCCCTTGTTGATCTTGAATTGAGTGGGAATTATCTTACTGGAAAAATTCCTAAAGAGCTTGGATTACTGAAGAATTTGCAGCAGCTTGAACTTTACTATAACCAACAACTTGTTGGCAACATACCTGTGGAGTTTGGAAATCTCACTGAGCTCATAGATTTGGATATGTCAGTGAACAAATTAACTGGTAGTATCCCAGCATCAGTTTTTGCACTTCCAAAGCTTAAAGTTTTGCAGCTTTACAACAATAGCCTCTCAGGAGAAATCCCTGGTGAGATTGAAAATTCAACAACCTTGAAAATTTTGTCACTCTATGACAATTTCCTGAGAGGACAAGTCCCTAGTAAACTAGGACAGTTCTCAGGAATGGTGGTTCTGGACTTGTCAGAAAACAACCTGAGTGGTCCATTGCCAACAGAAGTCTGCAAAGGAGGTAATCTACTCTACTTTCTTGTTTTGGATAATATGTTTTCTGGTGAGATACCAGACAGTTATGCAAACTGCATGACACTTTTGAGGTTTAGAGTCAGCAATAACCGTCTCGCCGGATCGGTTCCCAAGGGACTCCTTGGTCTACCACATGTTTCAATCATTGATTTGAGTATCAATAATTTGACCGGTGCAGTTCCTGAGATAAGTGGCAATTCTAGAAACTTGTCTGAACTTTTCTTACAGAGGAACAAGATCTCAGGTGTCATACCTCCATCATTGTCAAGAGCTATTAACCTTGTCAAGATTGATTTCAGCTATAACCTTATTTCTGGTCCAATACCTTCTGAAATTGGTAACCTTAGAAGGCTTAATTTGCTTACTTTACAAGGCAACAAACTAAGTTCTTCAATTCCTAGTTCACTCTCCTTATTGGAATCCCTTAACCTTCTTGATCTCTCCAACAATCTCTTAACTGGTAGTATCCCTGAAAGTCTATCAATACTGCTTCCAAACTCCATAAACTTCTCAAATAATTTACTATCTGGTCCAATCCCTCCTAAGCTGATCAAAGGAGGCTTACTAGAAAGCTTTTCGGGTAACCCTGGCCTATGTGTGCTACCAGTGTATGCTAATTCTTCTGCTCAAAGCTTCCCTGTATGTCCACATAACTCCAACAAGGGTAAGAGGATAAACACAATCTGGGTAGCTGGTGTATCAGTTGTTTTGATATTTATTGGAGCCGGCTTGTTCCTGAGACGATTGTGCAACAAAGAGACAGCTGCAGTGGAAAATGATGAGACAATGTCTTCTTCATTCTTCTCTTATGACGTGAAGAGCTTTCACATGATCACTTTTGACCAAAGGGAGATCATTGAGTCCTTGGTGGATAAGAATGTGATTGGGCAAGGAGGGTCTGGGACAGTGTACAAGATTGAGTTTAAAACTGGCGATGTTGTCGCTGTCAAGAGGCTGTGGAGCAGAAAATCCAAGGATTCGGCTGCCGAGGATCGGTTATTTATGGACAAGGCATTGAAAGCAGAAGTGGAAACACTAGGGAGTATAAGGCACAAGAACATAGTCAAACTCTATTGTTGCTTCTCCAGTTTGGATTGCAGCTTGTTGGTTTATGAGTATATGCCTAATGGTAACCTATGGGATGCCCTCCACAAAGGTTGGATCCATTTGGATTGGCCTACCAGGTACAAAATTGCAGTAGGAATTGCACAGGGTCTTTCGTACCTCCACCATGATTTGCTTCTTCCTATTATCCATAGAGATATCAAGACAACTAATATCCTCTTAGATGTTGATTACCAGCCCAAGGTTGCTGACTTTGGGATTGCCAAGGTTTTTCAAGCAAGAGGAGGAGGGAAGGATTCCTCTACTACTGTTATTGCAGGAACATATGGTTATTTAGCCCCAGAATATGCATATTCACCAAGGCCAACCACTAAGTGTGATGTGTACAGTTTTGGTGTGATTTTGATGGAATTGTTAACTGGAAAGAAGCCTATTGAGTCAAATTTTGGAGAAAACAGAAATATTGTGTTCTGGGTTTCAAACAAAATAGAAGGCAAGGAAGGAGCTAGGCCTAGTGAAGTACTTGATCAAAGATTATCAGCTTCATTCAAGGATGACATGATCAAAGTTCTAAGGATCGCAATTCGCTGCACCTACAAAGATCCAGCTAGTAGACCAACCATGAAAGAGGTTGTTCAGCTTCTGATTGAAGCAGTACCAAGAAGTTCAGATTGTAGCAAGTTATCAAACATGACCACCAAAGAAGTATCAAATGTCACCACAGTAATGAAAAATTTTGAACTATAA 3171 0.3945 MQFSSASLYWSINIKPLYTKDIYVHFSYYYYSNKNLLFHPLILVTAITISDPLLQPFHLIYSSYSFHSLQHLHSPQTTIKTTLLLSFFPLSNNMKHLFMSLFVIGVMIIISISQVMSSTNQSQFFSLMKESLSGNYPLVWNDGNKSVCHFTGVACNNKDEVINLDLSGWSISGNFPSDICSYLPNLHVLNLGHTKLNFNTHSITNCSHLEELNMNHMYLTGTLPDFSPLKSLRILDLSYNLFTGEFPLSVFNLTNLEVLNFNENGRFNLWQLPNNIDRLKKLKSMILTTCMVSGQIPPIIGNITSLVDLELSGNYLTGKIPKELGLLKNLQQLELYYNQQLVGNIPVEFGNLTELIDLDMSVNKLTGSIPASVFALPKLKVLQLYNNSLSGEIPGEIENSTTLKILSLYDNFLRGQVPSKLGQFSGMVVLDLSENNLSGPLPTEVCKGGNLLYFLVLDNMFSGEIPDSYANCMTLLRFRVSNNRLAGSVPKGLLGLPHVSIIDLSINNLTGAVPEISGNSRNLSELFLQRNKISGVIPPSLSRAINLVKIDFSYNLISGPIPSEIGNLRRLNLLTLQGNKLSSSIPSSLSLLESLNLLDLSNNLLTGSIPESLSILLPNSINFSNNLLSGPIPPKLIKGGLLESFSGNPGLCVLPVYANSSAQSFPVCPHNSNKGKRINTIWVAGVSVVLIFIGAGLFLRRLCNKETAAVENDETMSSSFFSYDVKSFHMITFDQREIIESLVDKNVIGQGGSGTVYKIEFKTGDVVAVKRLWSRKSKDSAAEDRLFMDKALKAEVETLGSIRHKNIVKLYCCFSSLDCSLLVYEYMPNGNLWDALHKGWIHLDWPTRYKIAVGIAQGLSYLHHDLLLPIIHRDIKTTNILLDVDYQPKVADFGIAKVFQARGGGKDSSTTVIAGTYGYLAPEYAYSPRPTTKCDVYSFGVILMELLTGKKPIESNFGENRNIVFWVSNKIEGKEGARPSEVLDQRLSASFKDDMIKVLRIAIRCTYKDPASRPTMKEVVQLLIEAVPRSSDCSKLSNMTTKEVSNVTTVMKNFEL 1056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0344 1056 Gene3D Ribonuclease Inhibitor 373 665 IPR032675 -
Lal17g0344 1056 ProSiteProfiles Protein kinase domain profile. 742 1027 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal17g0344 1056 SUPERFAMILY L domain-like 140 339 - -
Lal17g0344 1056 Gene3D Transferase(Phosphotransferase) domain 1 827 1048 - -
Lal17g0344 1056 ProSitePatterns Protein kinases ATP-binding region signature. 748 770 IPR017441 GO:0005524
Lal17g0344 1056 SMART serkin_6 742 1030 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal17g0344 1056 Pfam Protein kinase domain 744 1021 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal17g0344 1056 SUPERFAMILY Protein kinase-like (PK-like) 726 1023 IPR011009 -
Lal17g0344 1056 ProSitePatterns Serine/Threonine protein kinases active-site signature. 870 882 IPR008271 GO:0004672|GO:0006468
Lal17g0344 1056 Gene3D Phosphorylase Kinase; domain 1 725 826 - -
Lal17g0344 1056 SMART LRR_typ_2 183 206 IPR003591 -
Lal17g0344 1056 SMART LRR_typ_2 568 591 IPR003591 -
Lal17g0344 1056 SMART LRR_typ_2 424 448 IPR003591 -
Lal17g0344 1056 SMART LRR_typ_2 592 616 IPR003591 -
Lal17g0344 1056 SMART LRR_typ_2 376 400 IPR003591 -
Lal17g0344 1056 SMART LRR_typ_2 229 253 IPR003591 -
Lal17g0344 1056 SMART LRR_typ_2 496 519 IPR003591 -
Lal17g0344 1056 Gene3D Ribonuclease Inhibitor 119 268 IPR032675 -
Lal17g0344 1056 Pfam Leucine rich repeat 521 581 IPR001611 GO:0005515
Lal17g0344 1056 SUPERFAMILY L domain-like 273 511 - -
Lal17g0344 1056 PANTHER RECEPTOR PROTEIN-TYROSINE KINASE CEPR1 97 1034 - -
Lal17g0344 1056 Gene3D Ribonuclease Inhibitor 269 372 IPR032675 -
Lal17g0344 1056 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 97 1034 - -
Lal17g0344 1056 SUPERFAMILY L domain-like 468 668 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0344 Lal-Chr17 2212886 2216761 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0344 115 1047 Receptor kinase-like Gene Family AT5G49660 63.974 0.0 1204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Lal17g0344 Pkinase 1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0344 - - lja:Lj1g3v2096140.1 1513.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0344 17 2212886 2216761 Lal17g0344 17 2212886 2216761 ECH
Lal17g0344 17 2212886 2216761 Lal4g0307 4 1988080 1991620 LSH