Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0325 ATGATGGCAGTGAGTTCAGCCTGCAAGGTGGTAATGGATAATGGGAAATATGTGAGGTACACACCAGAACAGGTTGAAGCACTTGAAAGGCTTTACCATGAATGTCCTAAACCAACTTCCCTTCGCCGCCAACAGCTTATTAGAGAGTGTCCTATTCTCTCCCATATTGAACCTAAGCAGATCAAGGTTTGGTTTCAGAACCGAAGATGCAGAGAGAAACAGCGGAAGGAAGCGTCACGGTTGCAAGCTGTGAACAGAAAGTTGACAGCAATGAATAAGCTATTGATGGAGGAAAACGACAGATTGCAAAAACAAGTGTCTCAGCTTGTGTATGAGAATAGCTTTTTTCGCCAACACACCACACAGAATGCAACTCTTGCCACGGCAGACACAAGTAGCGAGTCGGTGGTAACGAGCGGTCAGAGGAACTTGACACCTCGGCATCCACCAAGGGATGCAAGCCCTGCTGGACTTTTGTCCATTGCAGAGGAAACTTTAGCAGACTTTCTTTCGAAGGCAACTGGAACTGCTGTTGAGTGGGTCCAAATGCCTGGGATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCCCTGGAGTGGCAGCACGTGCTTGCGGTCTTGTGGGTTTAGAACCTGCCAGGGTTGCTGAAATCCTCAAAGACCGGCTCTCATGGTTTCGTGATTGCCGGACTGTGGATGTTCTAAATATGATGCCCGTTGCAAATGGAGGAACCATCGAACTGCTTTACATGCAGTTGTATGCACCAACAACTTTGGCTCCTGGTCGCGACTTCTGGTTGCTGCGCTACACTTCTCTTTTGGAGGATGGTAGTCTTGTGGTCTGTGAAAGATCACTTAACAACACTCAGAATGGTCCTACTATGCCACCAGTGCAGCATTTTGTTAGAGCAGACATGATGCCAAGTGGGTATCTGATTAGGCCTTGTGAAGGAGGAGGATCCATCATTCATATTGTTGATCACATGGTTTTAGAGCCCTGGAGTGTACCTGAAGTTTTGCGCCCACTTTATGAGTCATCCATGCTGCTTGCTCAAAGGTCAACTATGGCGGCATTACGCCATTTGAGGCAGATTTCTCAAGAAGTTTCTCAGCCAAGTGTCACAGGATGGGGTAGAAGGCCTGTAGCTCTACGCGCACTTAGTCAGCGATTGAGCAAGGGCTTTAATGAAGCTGTCAATGGGTTTGCAGATGACGGCTGGTCCATGTTAGAGAGTGACGGCATAGATGATGTCACTCTACTTGTGAATTCATCATCTAGCAAGATGATGGGAGTAAATCTTGGCTATAACAACGGATTTCCTTCAGTGACCAGTTCCATACTGTGTGCTAAAGCGTCCATGTTGTTACAGAATGTACCTCCAGCACTTCTTATTAGATTCTTGCGGGAACACCGATCAGAATGGGCAGATAGCAGTATTGATGCTTACTCTGCTGCTGCTATTAAAGCTGGACCTTGTAGCTTGCCAGTTCCGCAAGAAGGAGTCTTTGGGGGTCAGTTCATGGAGGTTATTAAGCTTGAAAACATGGGCTACTATAGGGACGACATGACTATACCCGGTGATGTTTTCCTCCTGCAACTTTGTAGTGGAGTTGATGAACATGGAGTTGGCACCAGCGCAGAACTCGTTTTTGCCCCAATTGATGCATCTTTCTCTGATGATGCACCAATTTTATCTTCTGGTTTTCGCATCATACCTCTTGATTCTGGCACGGATGCTACTAGTCCAAACCGTACACTCGACCTTGCTTCCGCTCTTGATGTTGGAACTACAGGGAACAAAGCCAGTGGTGACAATTCAGGTTATTTGGGAAGCACCAAATCTGTGATGACAATAGCATTCCAGTTTGCATGTGAAGTCCACCTTCAAGATAGTATAGCAACTATGGCCCGACAATATGTCCGAAGTATTATTGCATCTGTTCAGAGGGTTTCATTAGCTCTTTCTACCTCGCAATTTGGTTCTCAAAATGCTTTTCACTTACCACCTGGCACCCCCGAGGCACAAACACTTACTCGGTGGATCTGTAACAGCCATAGGTTCTATCTAGGGGTAGAACTACTGAAGTGTGATGGCAATGAGCACATTCTCAAATCTCTTTGGCATCACCAAGATGCAGTTTTGTGCTGCTCTTTAAAGGCACTACCTGTTTTCACATTTGCAAATCAAGCAGGACTTGACATGCTAGAAACAACTTTGGTTTCACTTCAAGATATTACCCTAGAAAAAATATTCGATGACAGTGGAAAGAAAACATTGTGCTCTGAATTCCCTCAGATAATGCAGCAGGGTTTTATGTGTATTGAAGGTGGTATCTGTTTGTCCAGCATGGGAAGGCCAGTGTCATATGAGAGAGCAGTGGCATGGAAAGTATTAAATGATGAAGAAACAGCTCATTGCATCTGTTTCATGTTTATCAATTGGTCTTTTGTTTGA 2472 0.4547 MMAVSSACKVVMDNGKYVRYTPEQVEALERLYHECPKPTSLRRQQLIRECPILSHIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENSFFRQHTTQNATLATADTSSESVVTSGQRNLTPRHPPRDASPAGLLSIAEETLADFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCPGVAARACGLVGLEPARVAEILKDRLSWFRDCRTVDVLNMMPVANGGTIELLYMQLYAPTTLAPGRDFWLLRYTSLLEDGSLVVCERSLNNTQNGPTMPPVQHFVRADMMPSGYLIRPCEGGGSIIHIVDHMVLEPWSVPEVLRPLYESSMLLAQRSTMAALRHLRQISQEVSQPSVTGWGRRPVALRALSQRLSKGFNEAVNGFADDGWSMLESDGIDDVTLLVNSSSSKMMGVNLGYNNGFPSVTSSILCAKASMLLQNVPPALLIRFLREHRSEWADSSIDAYSAAAIKAGPCSLPVPQEGVFGGQFMEVIKLENMGYYRDDMTIPGDVFLLQLCSGVDEHGVGTSAELVFAPIDASFSDDAPILSSGFRIIPLDSGTDATSPNRTLDLASALDVGTTGNKASGDNSGYLGSTKSVMTIAFQFACEVHLQDSIATMARQYVRSIIASVQRVSLALSTSQFGSQNAFHLPPGTPEAQTLTRWICNSHRFYLGVELLKCDGNEHILKSLWHHQDAVLCCSLKALPVFTFANQAGLDMLETTLVSLQDITLEKIFDDSGKKTLCSEFPQIMQQGFMCIEGGICLSSMGRPVSYERAVAWKVLNDEETAHCICFMFINWSFV 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0325 823 Pfam START domain 161 369 IPR002913 GO:0008289
Lal17g0325 823 PANTHER CLASS III HD-ZIP PROTEIN CNA1 9 823 - -
Lal17g0325 823 Coils Coil 71 112 - -
Lal17g0325 823 MobiDBLite consensus disorder prediction 127 145 - -
Lal17g0325 823 Gene3D - 195 376 IPR023393 -
Lal17g0325 823 MobiDBLite consensus disorder prediction 127 155 - -
Lal17g0325 823 SUPERFAMILY Bet v1-like 160 371 - -
Lal17g0325 823 SUPERFAMILY Homeodomain-like 16 79 IPR009057 -
Lal17g0325 823 Pfam MEKHLA domain 682 822 IPR013978 -
Lal17g0325 823 Pfam Homeodomain 16 74 IPR001356 GO:0003677
Lal17g0325 823 CDD homeodomain 16 76 IPR001356 GO:0003677
Lal17g0325 823 ProSiteProfiles 'Homeobox' domain profile. 11 75 IPR001356 GO:0003677
Lal17g0325 823 Gene3D - 11 82 - -
Lal17g0325 823 SMART START_1 160 370 IPR002913 GO:0008289
Lal17g0325 823 SMART HOX_1 13 79 IPR001356 GO:0003677
Lal17g0325 823 CDD START_ArGLABRA2_like 155 370 - -
Lal17g0325 823 CDD bZIP 68 107 - -
Lal17g0325 823 ProSiteProfiles START domain profile. 151 365 IPR002913 GO:0008289
Lal17g0325 823 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 9 823 IPR044830 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0325 Lal-Chr17 2055612 2062663 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0325 12 823 Homeobox Transcription Factor Family AT4G32880 76.449 0.0 1327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lal17g0325 START 2.8e-48 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0325 K09338 - gmx:100815727 1511.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0325 17 2055612 2062663 Lal17g0325 17 2055612 2062663 ECH