Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0323 ATGGAAGTACAAGAGTTTTCCCACAACACCAACTTTTCTCACCAACAATTCCATTCTCACAACAACAACATGAGTTCTTGTTCTTCTGAGCATTTCATTGTTGAGGAATTCTTTAACTTCTCCAATGATGATAATCTTACTCTCTTTACAGACTCCATTTCTGGAAACTCAACTGATTCTTATACTTCCATTCACACCAATAATTCTCTCTCCGTCTCCGGCCACCAGAATTTCAAGCCTGACATTTTGTATGACACTACTGATCTCTGTGTCCCGTATGATGACCTTGCAGAGTTAGAATGGCTTTCAAACTTCGAAGAGGAATCATTATCCAATGAAGATTTACAGAAGATGCAACTCATATCCGGAATCAAAGCTTCAAATGATGCTGCATCAAAAAACCGTGAATTTCAACCTCAACCTCAACCCAAAAACCCAACCAGCCCAGTTTTTGATTCACCAGTGTCAGTTCCAGCCAAGGCCCGTAGCAAGGGGACCCGTGGGCCCCCATGCGACTGGACTTCACGTCTCCTTGTCCTCTCCCCAACAATGCCAACTTCAATCCCTCAGCCGAATCATCATGTCATCTTCCCACCTAAGAAGCCCATGCCTAGGAGGAGGGACTCAAGTGATCAAGGAGAGGGCAGAAGGTGCTTGCATTGCGCCACTGATAAAACTCCTCAGTGGCGCACTGGGCCCATGGGCCCAAAGACTCTATGCAATGCATGTGGCGTGAGGTACAAGTCGGGTCGGCTGGTGCCTGAATATAGGCCTGCAGCCAGCCCAACTTTCATTATGACAAGGCATTCCAATTCGCACCGGAAGGTGATGGAGCTGCGGCGACAGAAGGAGATGATCCAAGCCCAACATCACCAATTCAATCAGCATCATCAGAATATGAGCATGATGTATGATGTCTCATCCAATGGTGATGAATATTTAATTCATCAACATGTGGGTCCTTATTTTACATAG 975 0.4564 MEVQEFSHNTNFSHQQFHSHNNNMSSCSSEHFIVEEFFNFSNDDNLTLFTDSISGNSTDSYTSIHTNNSLSVSGHQNFKPDILYDTTDLCVPYDDLAELEWLSNFEEESLSNEDLQKMQLISGIKASNDAASKNREFQPQPQPKNPTSPVFDSPVSVPAKARSKGTRGPPCDWTSRLLVLSPTMPTSIPQPNHHVIFPPKKPMPRRRDSSDQGEGRRCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFIMTRHSNSHRKVMELRRQKEMIQAQHHQFNQHHQNMSMMYDVSSNGDEYLIHQHVGPYFT 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0323 324 SMART GATA_3 212 262 IPR000679 GO:0006355|GO:0043565
Lal17g0323 324 MobiDBLite consensus disorder prediction 201 217 - -
Lal17g0323 324 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 213 276 - -
Lal17g0323 324 Pfam GATA zinc finger 218 251 IPR000679 GO:0006355|GO:0043565
Lal17g0323 324 MobiDBLite consensus disorder prediction 189 217 - -
Lal17g0323 324 ProSitePatterns GATA-type zinc finger domain. 218 243 IPR000679 GO:0006355|GO:0043565
Lal17g0323 324 MobiDBLite consensus disorder prediction 129 173 - -
Lal17g0323 324 PIRSF Txn_fac_GATA_plant 2 309 IPR016679 GO:0003677|GO:0005634|GO:0045893
Lal17g0323 324 Gene3D - 208 295 IPR013088 GO:0006355|GO:0008270
Lal17g0323 324 ProSiteProfiles GATA-type zinc finger domain profile. 212 248 IPR000679 GO:0006355|GO:0043565
Lal17g0323 324 PANTHER GATA TRANSCRIPTION FACTOR 1 324 - -
Lal17g0323 324 PANTHER GATA TRANSCRIPTION FACTOR 1 324 - -
Lal17g0323 324 CDD ZnF_GATA 217 268 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0323 Lal-Chr17 2039763 2041171 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0323 13 323 C2C2-Gata Transcription Factor Family AT5G25830 47.507 9.04e-88 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lal17g0323 GATA 2.9e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0323 - - gmx:100784144 334.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0323 17 2039763 2041171 Lal17g0323 17 2039763 2041171 ECH
Lal17g0323 17 2039763 2041171 Lal4g0288 4 1865218 1867400 LSH