Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0317 ATGAGTGTTGAACCCCAAAATTCAGAGAGTGAGAGCACCTCAAACTCAAACTCATTATCTCAACCTTCAACAACGAAAAAGGTGAAAAGAATTAGAGACTCCAACAAGCACCCTTTGTACCATGGGGTCCGTATGAGAAACTGGGGCAAATGGGTCTCTGAAATTCGTGAGCCACGAAAGAAATCACGCATATGGTTAGGTACATTTTCTACACCTGAAATGGCTGCAAGAGCACACGACGTTGCAGCATTAAGCATCAAGGGCAATTCCGCCATTCTCAATTTCCCTGACCTTGTTGATTCTCTTCCACGCCCTGTCTCACGCGCCCCACGTGATGTTCAAGCTGCGGCTGCGAAAGCGGCGCAAATGGACAACCTCGACATACCCACTTCAACAACAACAACAACAACAACAACAACGTTGTCAATGTCTTCTTCTTCTTCCCTCTCTTCTTTGGCTTCTGCAATGGACTTGTGCACGGAAGAGTCTCATGAGTTGAGTGAGTTAATAGAGTTGCCGAGGTTGGAAAACAGTATTGATGAGAAGAGAGAGTTTGTGTTCATGGATTCAGTTGGTAGTTGGAATATGTATCAGCCACCATGGTTTGATGAAGACTTTGATCAGCTTTCAGTCCCAGAGAGTAGGTTTGAGAGTTTGGTGTGGAATTAA 669 0.4499 MSVEPQNSESESTSNSNSLSQPSTTKKVKRIRDSNKHPLYHGVRMRNWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGNSAILNFPDLVDSLPRPVSRAPRDVQAAAAKAAQMDNLDIPTSTTTTTTTTTLSMSSSSSLSSLASAMDLCTEESHELSELIELPRLENSIDEKREFVFMDSVGSWNMYQPPWFDEDFDQLSVPESRFESLVWN 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0317 222 MobiDBLite consensus disorder prediction 1 25 - -
Lal17g0317 222 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 8 205 - -
Lal17g0317 222 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Lal17g0317 222 PRINTS Ethylene responsive element binding protein signature 62 78 IPR001471 GO:0003700|GO:0006355
Lal17g0317 222 MobiDBLite consensus disorder prediction 1 37 - -
Lal17g0317 222 Pfam AP2 domain 38 88 IPR001471 GO:0003700|GO:0006355
Lal17g0317 222 CDD AP2 38 98 IPR001471 GO:0003700|GO:0006355
Lal17g0317 222 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700|GO:0006355
Lal17g0317 222 SMART rav1_2 39 102 IPR001471 GO:0003700|GO:0006355
Lal17g0317 222 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 8 205 - -
Lal17g0317 222 Gene3D AP2/ERF domain 39 97 IPR036955 GO:0003700|GO:0006355
Lal17g0317 222 SUPERFAMILY DNA-binding domain 39 97 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0317 Lal-Chr17 1987762 1988430 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0317 7 201 AP2-EREBP Transcription Factor Family AT5G11590 62.000 8.97e-71 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lal17g0317 AP2 7.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0317 K09286 - cit:102608812 238.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0317 17 1987762 1988430 Lal17g0317 17 1987762 1988430 ECH
Lal17g0317 17 1987762 1988430 Lal4g0285 4 1838483 1839139 LSH