Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0314 ATGGCTCTCAAAATGGCTTTAGGAAGCACCCGAGAGATTACTAAACCAGATTGCATTAAGGCCCTTGTGGTTGAATTCATTGCAACCTTCCTCTTTGTATTTACTGGTGTTGCTTCTACCATGCTTGTAGATAAGGTTGGTGGAGATGCAGTTGTGGGGTTGTTTGCTATAGCAGTGGCACATGGACTTGTGGTTGCTGTAATGATTTCTGCTGCTCACATCTCCGGTGGCCACCTTAACCCTGCCGTCACCCTTGGCCTTCTTGTTGGTGGCCACATCACAATCTACCGTTCAATCTTTTATTGGATTGATCAATTAGTAGCAGCTTCATTAGCTTCTTATCTGCTTTACTACCTCACAGGAGGACAGACAATTCCAGTTCATACGTTAAGAAGTGGAGTGGGGTATAGTGAAGGAGTAATATGGGAGATTGTGTTGACATTCTCTCTATTATTCACTGTGTATGGTACTATGGTGGACCCAAAGAAGAGATCAGAAGGTGGGGTTGGACCAATACTTGTAGGGTTTGTAGTAGGGGCTAACATCCTTGCTGGTGGGGCATTCTCTGCTGCTTCTATGAACCCAGCAAGATCATTTGGTCCTGCTTTGGTTAATGGTAACTGGACTGATCATTGGGTTTATTGGGTTGGACCTCTTATTGGTGCTACCCTTTCTGGTTTCATCTATCAGAATTTCTTCATTGATAGCTCTCATGTTCCACTTCCTCTAGATGAAGAAAACTAA 744 0.4382 MALKMALGSTREITKPDCIKALVVEFIATFLFVFTGVASTMLVDKVGGDAVVGLFAIAVAHGLVVAVMISAAHISGGHLNPAVTLGLLVGGHITIYRSIFYWIDQLVAASLASYLLYYLTGGQTIPVHTLRSGVGYSEGVIWEIVLTFSLLFTVYGTMVDPKKRSEGGVGPILVGFVVGANILAGGAFSAASMNPARSFGPALVNGNWTDHWVYWVGPLIGATLSGFIYQNFFIDSSHVPLPLDEEN 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0314 247 Pfam Major intrinsic protein 13 229 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal17g0314 247 TIGRFAM MIP: MIP family channel proteins 25 229 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal17g0314 247 Gene3D Glycerol uptake facilitator protein. 3 241 IPR023271 -
Lal17g0314 247 PANTHER AQUAPORIN TIP4-1 3 246 - -
Lal17g0314 247 CDD MIP 20 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal17g0314 247 ProSitePatterns MIP family signature. 78 86 IPR022357 -
Lal17g0314 247 SUPERFAMILY Aquaporin-like 12 242 IPR023271 -
Lal17g0314 247 PRINTS Major intrinsic protein family signature 20 39 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal17g0314 247 PRINTS Major intrinsic protein family signature 60 84 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal17g0314 247 PRINTS Major intrinsic protein family signature 97 116 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal17g0314 247 PRINTS Major intrinsic protein family signature 142 160 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal17g0314 247 PRINTS Major intrinsic protein family signature 175 197 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal17g0314 247 PRINTS Major intrinsic protein family signature 212 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal17g0314 247 PANTHER AQUAPORIN-8 3 246 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0314 Lal-Chr17 1971067 1972874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0314 4 246 Major Intrinsic Protein MIP AT2G25810 72.016 9.58e-119 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0314 K09873 - gmx:100793258 415.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0314 17 1971067 1972874 Lal17g0314 17 1971067 1972874 ECH
Lal17g0314 17 1971067 1972874 Lal4g0281 4 1822386 1824180 LSH