Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0287 ATGGAATCTGCGCCGCAATCTCTACTTCCGCCGCCACCTATTTTCCCCGGCTTCTTCAAACGTTTGTCGGAGTTGGATATCTATGATGATCACTGGTATAACGAACTCGCAAACGATGTTGACGACGTCAAACCTGATTACTTCCGCTTCACCGGTAACGATGAAATCATCGCCGGTGTTTCCTCCCATGACCTCACTCCCGCCACCGCCATCCAAAATAATACGGATGCAGTGACTGCATTTTCAACCTGTGGAGATACCATTGTCAGTTCCCAAAACGTCACTCCCAAACACTCAACCATGTCTGCTACTATTGATTATCAAGCTTCAAATTGTGGCACTGGTAATGATTTGGGCACAACAGTTGGCAGCCCAGTTTCAGCTAATAAACCAAACAGTAGTGAGAATCAAACCAAAGGAGCTACTAGTGGTTCATCCGAGCAGTCTGATGAGGATGATGAATTTGGTCCTTGTGAACAGAGCACAAATCCTCTTGATGCGAAGCGCCTTAGAAGGAAGGTTTCTAATCGCGAGTCTGCCAGGAGGTCAAGAAGAAGAAAACAAGCTCAGTTGGCTGAACTTGAGTTGCAGGTTGAAAAATTGAAACTGGAAAATGCAACCCTATACAAGCAGTTTACGCATGCAAGCCAACAATTTCGTGATGCTGATACAAACAACCGCGTGCTAAAATCAGATGTAGAAGCTTTGAGAGCTAAGGTGAAGTTAGCTGAGGATATGGTCACCCGTAGCTCTTTCACCTTAAACAATCAGTTTCTTCAGACTCAGTCTCAATTGAGCACACCACCACAACTCAACACGACTAATCTGCGCCCCATGGCACATGTCTCACCAACCATCACTGTCCATGGAAATGATGCCTCATATGGTGGTGTCACAGTTGGTGGGCAGAACTCAACTCATGGGCTTGGAAACTTGGATATAACTTACAACAATGTCAACAATGGAGTCCTAAGTGATGCTGTGAGCTCTGTGACTATGTGGCAGTAA 1008 0.4563 MESAPQSLLPPPPIFPGFFKRLSELDIYDDHWYNELANDVDDVKPDYFRFTGNDEIIAGVSSHDLTPATAIQNNTDAVTAFSTCGDTIVSSQNVTPKHSTMSATIDYQASNCGTGNDLGTTVGSPVSANKPNSSENQTKGATSGSSEQSDEDDEFGPCEQSTNPLDAKRLRRKVSNRESARRSRRRKQAQLAELELQVEKLKLENATLYKQFTHASQQFRDADTNNRVLKSDVEALRAKVKLAEDMVTRSSFTLNNQFLQTQSQLSTPPQLNTTNLRPMAHVSPTITVHGNDASYGGVTVGGQNSTHGLGNLDITYNNVNNGVLSDAVSSVTMWQ 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0287 335 PANTHER BASIC LEUCINE ZIPPER 63 69 334 - -
Lal17g0287 335 Coils Coil 226 246 - -
Lal17g0287 335 MobiDBLite consensus disorder prediction 114 188 - -
Lal17g0287 335 MobiDBLite consensus disorder prediction 114 145 - -
Lal17g0287 335 Pfam bZIP transcription factor 167 212 IPR004827 GO:0003700|GO:0006355
Lal17g0287 335 SUPERFAMILY Leucine zipper domain 168 218 IPR046347 GO:0003700|GO:0006355
Lal17g0287 335 SMART brlzneu 164 228 IPR004827 GO:0003700|GO:0006355
Lal17g0287 335 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 171 186 IPR004827 GO:0003700|GO:0006355
Lal17g0287 335 Coils Coil 177 211 - -
Lal17g0287 335 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 166 229 IPR004827 GO:0003700|GO:0006355
Lal17g0287 335 Gene3D - 167 223 - -
Lal17g0287 335 PANTHER BZIP TRANSCRIPTION FACTOR 69 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0287 Lal-Chr17 1787576 1790659 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0287 106 334 bZIP Transcription Factor Family AT5G24800 47.863 5.41e-55 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Lal17g0287 bZIP_1 6.1e-11 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0287 K25784 - gmx:780555 341.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0287 17 1787576 1790659 Lal17g0287 17 1787576 1790659 ECH
Lal17g0287 17 1787576 1790659 Lal21g0393 21 2673389 2677886 LSH