Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0280 ATGCAACATAGGTCAAATTTTCAGCAACAACCGCAGATGTATAACCCTAACATGCTCGCTGCGGCTATGTCTCAGATGGATCCTGTTCCAAGTGGCAATCTGCCTCCTGGTTTTGACGTTTCTGCATGTCGTAGTGTTTATGTAGGAAATATTAATGTAAATGTCACGGATCAGCTCCTAGCAGAAGTGTTTCAGAGTGCTGGTCCTCTTGCTGGATGCAAGCTCATAAGAAAAGACAAGTCCTCCTATGGTTTTGTGGACTACCATGATAGAGCATCTGCAGCCCTTGCTATAATGACATTGCATGGACGGCAACTATATGGTCAAGCACTTAAGGTGAACTGGGCATATGCCAATAGCAGTAGGGAGGATACTTCAGGGCACTTTAATGTATTTGTTGGTGATTTGAGTCCAGAGGTTACTGATGCAACTTTATATGCATGCTTCTCAGTCTATCATAGTTGTTCTGACGCAAGGGTTATGTGGGATCACAAAACTGGCCGCTCAAAAGGATATGGCTTTGTTTCTTTCCGTGATCATCAGGATGCCCAAAGTGCCATCAATGATATGACGGGTAAATGGCTGGGAAATAGGCAGATACGATGCAATTGGGCAACTAAGGGTGCTGGTGCCAGCTCCGGTGAAGAGAGGAACAATGATAACCCAAATGCTGTTGTGCTTACAAATGGGTCTTCAGATGGGGGTCAGGATAATAACAATGAAGACGCGCCTGAAAACAATACTGCATACACCACTGTTTATGTGGGCAACCTTCCCCATGATGTAACTCAAGCTGAACTTCATTGTCAGTTCCATGCACTCGGTGCTGGGGTTATTGAGGAGGTCCGAGTTCAGAGGGATAAAGGTTTTGGATTTGTCAGGTACAACACTCATGATGAAGCAGCATTGGCCATTCAGATTGGTAATGGAAGAATAGTTCGTGGGAAGAGTATGAAGTGCTCATGGGGTAGCAAGCCAACTCCTCCTGGAACAGCTTCGAATCCCTTACCTCCTCCTGCTCAACCATATCAAATACTTCCCACTGCTGGGATGAACCAAGGCTATTCTCATGCTGAGTTGTTGGCTTACCAGCGCCAACTGGCCATGAGTCAAGTTGCTGTATCTGGCCTTTCCGGCCAAGCCCTTCTGCAAATGACTGGGCAACATGGCCTAGCTCCTGCTTCGATGGGCATAAACTCTGGGGGATCTCAAGCCATGTATGATGCATATACTGGTAATTCATCAAGACAACAACAGCTTATGTACTATCGTTGA 1275 0.4596 MQHRSNFQQQPQMYNPNMLAAAMSQMDPVPSGNLPPGFDVSACRSVYVGNINVNVTDQLLAEVFQSAGPLAGCKLIRKDKSSYGFVDYHDRASAALAIMTLHGRQLYGQALKVNWAYANSSREDTSGHFNVFVGDLSPEVTDATLYACFSVYHSCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWATKGAGASSGEERNNDNPNAVVLTNGSSDGGQDNNNEDAPENNTAYTTVYVGNLPHDVTQAELHCQFHALGAGVIEEVRVQRDKGFGFVRYNTHDEAALAIQIGNGRIVRGKSMKCSWGSKPTPPGTASNPLPPPAQPYQILPTAGMNQGYSHAELLAYQRQLAMSQVAVSGLSGQALLQMTGQHGLAPASMGINSGGSQAMYDAYTGNSSRQQQLMYYR 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0280 424 Gene3D - 39 123 IPR012677 -
Lal17g0280 424 Gene3D - 229 329 IPR012677 -
Lal17g0280 424 SUPERFAMILY RNA-binding domain, RBD 27 122 IPR035979 GO:0003676
Lal17g0280 424 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 251 325 IPR000504 GO:0003723
Lal17g0280 424 PANTHER OLIGOURIDYLATE-BINDING PROTEIN 1B-LIKE ISOFORM X1 18 421 - -
Lal17g0280 424 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 253 318 IPR000504 GO:0003723
Lal17g0280 424 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 46 112 IPR000504 GO:0003723
Lal17g0280 424 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 131 201 IPR000504 GO:0003723
Lal17g0280 424 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 44 118 IPR000504 GO:0003723
Lal17g0280 424 SUPERFAMILY RNA-binding domain, RBD 237 329 IPR035979 GO:0003676
Lal17g0280 424 SMART rrm1_1 45 114 IPR000504 GO:0003723
Lal17g0280 424 SMART rrm1_1 130 203 IPR000504 GO:0003723
Lal17g0280 424 SMART rrm1_1 252 321 IPR000504 GO:0003723
Lal17g0280 424 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 18 421 - -
Lal17g0280 424 CDD RRM2_PUB1 130 204 - -
Lal17g0280 424 MobiDBLite consensus disorder prediction 212 246 - -
Lal17g0280 424 Gene3D - 124 223 IPR012677 -
Lal17g0280 424 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 129 207 IPR000504 GO:0003723
Lal17g0280 424 CDD RRM3_TIA1_like 251 325 - -
Lal17g0280 424 SUPERFAMILY RNA-binding domain, RBD 123 235 IPR035979 GO:0003676
Lal17g0280 424 MobiDBLite consensus disorder prediction 208 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0280 Lal-Chr17 1739288 1744939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0280 15 325 Eukaryotic Initiation Factors Gene Family AT4G34110 25.904 7.92e-21 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0280 K13201 - gmx:100777108 788.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0280 17 1739288 1744939 Lal17g0280 17 1739288 1744939 ECH
Lal17g0280 17 1739288 1744939 Lal21g0386 21 2621159 2628076 LSH