Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0279 ATGAAGCTTAATAATGAGAAGCTATTAAGGTTCTCCGATGATGAAAAACAAAACCTTGAGTTTCAATGGGAAAAGAAAGATGCTAACCAACTCCATGAGAATCCATTCCCAGCATACAAGATGAACCATGAAGGAAAGTTTAATATCAGAATGCCAACATTTGGAAAGTTTAAGGTTTTCCCAGAAAAACATGAGACATGGAAGAAAAGAATTCTTGATCCTGGCAGTGATATGATTTTGGAGTGGAATAGGGCATTCCTGTTTTCTTGTATAATGTCACTGTTTGTTGATCCACTTTTTTTCTACCTTCCCTCAGTAGCAAATGATGGGAATTCATCATGTATGGTTACTGATTTGAACCTAGGAATTGTTGTGACATGTTTCAGGACAATTGCTGATGTTTTCTACCTCCTTAACATGATCATTAAGTTCAGGACAGCTTTTGTGTCACCAAGTTCAAGGGTTTTTGGAAGAGGTGAACTTGTTATGGATCCCAAGTTGATTGCTAGGAGGTATCTTAGATCAGAGTTCTTTCTAGATCTTGTAGCTACCCTGCCTCTTCCCCAGATTGTGATTTGGTTTATATTGCCAGCAATTAGAAGTTCTCATGCTGATCATACCAACAATGCTCTTGTACTGATTGTCCTGCTTCAATATATTCCAAGATTATATTTGACTTTCCCACTAAGCTCTCAGATTGTTAAAGCCACCGGCTTAGTTACGAAGACGGCTTGGGCTGGAGCTGCTTACAATCTTTTACTTTACATGTTAGCAAGTCATGTCTTAGGGGCATCATGGTATTTGTTGTCAATTGAAAGACATGCTACTTGCTGGAAAACTGAATGCAGGAATGAAAGCCTCCCTATAAAATGTACTCTTAAGTACTTGGATTGCGGTAGTTTAGACGACGAAGATCGCATGAAGTGGTTAAATACAACTTCAGTGTTTGGTAACTGCAATCCAGCAAATAGCACCAATTTCACCTATGGAATATTTGGAGTTGCAGTAGAAAACAATGTTATATCCTCTTTGTTTTTAGAGAAGTATCTCTATTGTCTCTGGTGGGGTTTGCAGAACTTGAGTTCCTATGGCCAGGGTTTAAGTACAAGCATATTTGTTTGGGAAACTACATTTGCAATACTCATAGCTATTTTGGGTCTAGTTTTGTTTGCCCACTTAATTGGTAACATGCAGACATATCTGCAATCTATTACTGTGAGGCTTGAAGAGTGGAGGCTCAAGCAACGTGACACCGAAGAGTGGATGAGACATCGCCAGCTCCCGAAACATCTCCAAGAGCGTATCCGAAGATTTGTTCAATATAAATGGCTTGCAACAAGGGGGGTTGATGAAGAAACAATCTTACAAGGCCTTCCCATAGACTTACGCAGAGATATCCAACGTCACCTTTGCTTGGACCTTGTTCGACGCGTCCCATTTTTCTCACAAATGGATGATCAGCTACTTGATGCAATTTGCGAGCGATTAGTCTCATCATTGAGTACTCAAGGCACATACATTGTTAGGGAGGGAGATCCTGTTACAGAGATGCTTTTTATCATTAGAGGGAAACTTGAAAGCTCAACCACAAATGGAGGAAGAACAGGTTTTTTCAACTCTATTACCTTAAGGCCGGGCGATTTCTGTGGAGAAGAGTTACTTGCTTGGGCATTGCTTCCAAACTCTACTCTCAACTTGCCTTCTTCTACAAGAACAGTAAAAGCCATCGTCGAAGTGGAAGCTTTTGCACTAAGAGCACAAGATCTTAAATTCGTTGCGAACCAATTTCGACGGTTGCATAGCAAGAAGTTACAACACACCTTCCGGTTCTACTCTCACCATTGGAGGACATGGGGTGCCTGCTTCATTCAGGTAGCTTGGCGCCGACACAAGAAGAGAGCATTGGCAAAGTTCCTTAGCATGAGGGAGTCCCTCTCCTTCAATGATCAAATGGAACATGGTGATGAAGAGCATAATGTTATGGCTGCAAACACTACACAAGTAAAACAAAGCCTAGGTGTTACTATACTAGCTTCAAGGTTTGCTGCAAACACAAGGAGAGGGGCTCAGAAGATCAAAGATGTTGAGATGCTCAAGTTGCAAAAGCCTGAAGAGCCAGATTTCTCAGTAGAGCCTGAAGATGACTAG 2148 0.4106 MKLNNEKLLRFSDDEKQNLEFQWEKKDANQLHENPFPAYKMNHEGKFNIRMPTFGKFKVFPEKHETWKKRILDPGSDMILEWNRAFLFSCIMSLFVDPLFFYLPSVANDGNSSCMVTDLNLGIVVTCFRTIADVFYLLNMIIKFRTAFVSPSSRVFGRGELVMDPKLIARRYLRSEFFLDLVATLPLPQIVIWFILPAIRSSHADHTNNALVLIVLLQYIPRLYLTFPLSSQIVKATGLVTKTAWAGAAYNLLLYMLASHVLGASWYLLSIERHATCWKTECRNESLPIKCTLKYLDCGSLDDEDRMKWLNTTSVFGNCNPANSTNFTYGIFGVAVENNVISSLFLEKYLYCLWWGLQNLSSYGQGLSTSIFVWETTFAILIAILGLVLFAHLIGNMQTYLQSITVRLEEWRLKQRDTEEWMRHRQLPKHLQERIRRFVQYKWLATRGVDEETILQGLPIDLRRDIQRHLCLDLVRRVPFFSQMDDQLLDAICERLVSSLSTQGTYIVREGDPVTEMLFIIRGKLESSTTNGGRTGFFNSITLRPGDFCGEELLAWALLPNSTLNLPSSTRTVKAIVEVEAFALRAQDLKFVANQFRRLHSKKLQHTFRFYSHHWRTWGACFIQVAWRRHKKRALAKFLSMRESLSFNDQMEHGDEEHNVMAANTTQVKQSLGVTILASRFAANTRRGAQKIKDVEMLKLQKPEEPDFSVEPEDD 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0279 715 Gene3D - 107 406 - -
Lal17g0279 715 Gene3D Jelly Rolls 478 598 IPR014710 -
Lal17g0279 715 SUPERFAMILY Voltage-gated potassium channels 76 402 - -
Lal17g0279 715 CDD CAP_ED 480 611 IPR000595 -
Lal17g0279 715 Pfam Cyclic nucleotide-binding domain 503 591 IPR000595 -
Lal17g0279 715 ProSiteProfiles cAMP/cGMP binding motif profile. 480 554 IPR000595 -
Lal17g0279 715 SMART cnmp_10 480 611 IPR000595 -
Lal17g0279 715 Pfam Ion transport protein 82 407 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lal17g0279 715 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 14-RELATED 39 711 - -
Lal17g0279 715 PRINTS EAG/ELK/ERG potassium channel family signature 140 149 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lal17g0279 715 PRINTS EAG/ELK/ERG potassium channel family signature 349 366 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lal17g0279 715 PRINTS EAG/ELK/ERG potassium channel family signature 375 386 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lal17g0279 715 PRINTS EAG/ELK/ERG potassium channel family signature 393 402 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lal17g0279 715 PRINTS EAG/ELK/ERG potassium channel family signature 443 450 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lal17g0279 715 SUPERFAMILY cAMP-binding domain-like 410 602 IPR018490 -
Lal17g0279 715 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 39 711 - -
Lal17g0279 715 Gene3D Helix hairpin bin 408 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0279 Lal-Chr17 1735481 1738954 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0279 10 711 Ion Channels AT2G24610 70.531 0.0 1044
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0279 K05391 - gmx:100803334 1240.71