Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0278 ATGTCTCGCGTGTATGTTGGTAACCTGGATTCCCGAGTTACTGAGAGAGAACTTGAAGATGAATTCCATGTTTTTGGAGTTATACGAAGTGTGTGGGTTGCACGGAGGCCACCTGGTTATGCTTTTATTGATTTTGATGACCATAGAGATGCACAGGATGCTATCCGTGAAATAGATGGTAAGAATGGTTGGAGGGTAGAGCTTTCTCACAATTCTAGAGGTGGCGGTGGTGGACGTGGAGGTGGCCGTGGACGCCCTGGTGGCGGTGGTTCTGATTTGAAATGTTATGAGTGTGGTGAACCCGGTCATTTTGCTCGAGAGTGTCGCTCACGTGGTGGTTCTGGAAGACGCTATAGTCGCAGTCCACCTCGATTTCGTAGGAGCCCAAGTTATGGCCGAAGAAGTTACAGTCCTCATAGGAGGTCCCCTAGGCGCCGCAGCTTGTCACCCCGTGGACGCTTGTCGCCCCGTGGACGCTTGTCACCCCGCAGCTATAGCAGGTCACCCCCTCCTTACCGTGGACGCGAGGAACTTAAATATGGTAATGGGAATGGTTTAAGGGATTGA 567 0.515 MSRVYVGNLDSRVTERELEDEFHVFGVIRSVWVARRPPGYAFIDFDDHRDAQDAIREIDGKNGWRVELSHNSRGGGGGRGGGRGRPGGGGSDLKCYECGEPGHFARECRSRGGSGRRYSRSPPRFRRSPSYGRRSYSPHRRSPRRRSLSPRGRLSPRGRLSPRSYSRSPPPYRGREELKYGNGNGLRD 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0278 188 MobiDBLite consensus disorder prediction 133 152 - -
Lal17g0278 188 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
Lal17g0278 188 SUPERFAMILY RNA-binding domain, RBD 3 89 IPR035979 GO:0003676
Lal17g0278 188 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 73 IPR000504 GO:0003723
Lal17g0278 188 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RSZ22A-LIKE ISOFORM X1 2 183 - -
Lal17g0278 188 Gene3D - 91 148 - -
Lal17g0278 188 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 183 - -
Lal17g0278 188 MobiDBLite consensus disorder prediction 106 188 - -
Lal17g0278 188 SMART rrm1_1 3 69 IPR000504 GO:0003723
Lal17g0278 188 MobiDBLite consensus disorder prediction 66 92 - -
Lal17g0278 188 SUPERFAMILY Retrovirus zinc finger-like domains 77 115 IPR036875 GO:0003676|GO:0008270
Lal17g0278 188 Pfam Zinc knuckle 94 109 IPR001878 GO:0003676|GO:0008270
Lal17g0278 188 ProSiteProfiles Zinc finger CCHC-type profile. 94 110 IPR001878 GO:0003676|GO:0008270
Lal17g0278 188 Gene3D - 2 69 IPR012677 -
Lal17g0278 188 SMART c2hcfinal6 94 110 IPR001878 GO:0003676|GO:0008270
Lal17g0278 188 CDD RRM_SRSF3_like 3 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0278 Lal-Chr17 1729694 1733272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0278 2 60 Eukaryotic Initiation Factors Gene Family AT2G36660 38.095 6.23e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0278 K12896 - pvy:116134871 201.445