Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0274 ATGGTTCCAACTACTAGGATGCGTGCCCGGATAAAGGCATATGCTTGTCAAGTCATGCATGCAATCATGGGAAGTGTCTGCACAATTTGTATCAGGCTGCTTGGAAGATTCAATAACTCCTTGTTTTGGCTGTTGAGTGAAAGCTTATTTGAAAGGAATAAACGAGTGATGGATGAATATTCTGGTAAAAGATCTACTGGTGGGGTGGTAGTCCCTAGAAAGGGGATGGGACATGTCTTCAAAGATACTGCTAATATTAAAGATCGTAATAGTCAAGCTTGCAGCCGCCTTGGTTGTAGTAGAAGAGTTAACTCTCCTAAAGGTGCTCAAGTTGGTTCTTCTGAGAAAGGTAAATCTTTGAAGCCTTCAACCCGATCCTCTGCCACTGGCAAGGAAGCAATTGGAAGTTCCTCTAGAGCTATCACAGGGACTAGTAGCCCAGGGAAACCCCTTCTAAGGCCTCAAAAAACATTGTCCTCTCAGTTAGAGGCAGATTCATCTGAAACAAGTAGCATACAGGATGAACCAGAAGCTTCAAATCTCATCGCTCCACCTGAAAAGATTCAGAGAGGACTTCAAGCAGAAGTTGAAAATGTGGATTCTGGTGATCCCATGCCGATGGAAGTAGGGAGCTCTAGTGCAGCATCTAATACAAAATCTCGGAGGAGTTTTCATCCTAGACCTGGATTTCGTGGTCAAGAAGTTAAAAGTAATGGGCCAGTTACACGTGCTGGTGCCAATAGCTATGGGTTGAGGAACCTCAAATGCAACTCTATATCTGATGTCATCCCAGCTGGCGGCTGTTCATCATCTGATTCAACCCTTAACAGAAGGAAGAATATGTTAAAAAAGAGAAATAGTGAAGGCGAAAGCAGTTCCAGTGCTAGAGGGAAGAACATGAGTGGGCCTTCATTTGAAGGACGGAGTTGTGGTTCCAGAAATGGCATATCTATCTCCGATTCAAGAAGATCTAGAAATACTCCTCCTCACATAGACAGGCCGGACAGCAATGTTGGTTCCGTTAGGACACGAAGAACAGTGAGCACTCAAGCCAGAGGAAGGTTTTCCAGCCAAGGAAATGTTAATCCAGTGGCAACCAGCGAGTCTCCTTCAGTTGTTCCTCCTTTGCCATGTTCTGCTGATCTTAATGCTCCTGGTGTATCATATCATTCTTCTGTGGAGGCTGCCTTAAGTCGACCAAGATCTTATATTTTGCCAGGTACTAGCAATGAGGAGTTATATGGTGTTATGCCTGTGCCTTCTTCAGAATATGGCATAACTCGTTCTCTAATAAATCGGGAGGGATTTCGACGACGCTACAATATGGATGGTATTGCAGAGGTATTGTTGGCACTTGAGAGGATTGAGCAAGATGTTGAGCTAACACATGAGCAAATTCTTATGCTGGAGTCCAACTTGTTCCTCAATGGACTGAACTTCTATGATCAGCATAGAGACATGCGGCTGGACATTGATAACATGTCATATGAGAGTTTTGCGATTACAACAGATTTGAATGAAAATATTAACAATGAACTGTTAGCTCTGGAAGAGAGGATGGGTACTGTGAGCACTGCTCTAACAGAGGAAGCACTATCAGAATGTCTGAAGAGAAGTTTCTATCAGCCCTTGCCCAGAGATGACGAAGCTGAGAGTTATGATGAGTATAAAGATGATACCAAATGCAGCATCTGTCAGGAGGATTATTTGGTTGCAGATGAAGTAGGGAGTCTGAAATGTGAACATAAGTATCATGTGGTTTGTATACAGCAATGGCTGAGGCTGAAGAACTGGTGCCCTATTTGCAAAGCACCAATAGAGCCTTCAAATTCATCATCTCCATCCCATTAG 1851 0.4349 MVPTTRMRARIKAYACQVMHAIMGSVCTICIRLLGRFNNSLFWLLSESLFERNKRVMDEYSGKRSTGGVVVPRKGMGHVFKDTANIKDRNSQACSRLGCSRRVNSPKGAQVGSSEKGKSLKPSTRSSATGKEAIGSSSRAITGTSSPGKPLLRPQKTLSSQLEADSSETSSIQDEPEASNLIAPPEKIQRGLQAEVENVDSGDPMPMEVGSSSAASNTKSRRSFHPRPGFRGQEVKSNGPVTRAGANSYGLRNLKCNSISDVIPAGGCSSSDSTLNRRKNMLKKRNSEGESSSSARGKNMSGPSFEGRSCGSRNGISISDSRRSRNTPPHIDRPDSNVGSVRTRRTVSTQARGRFSSQGNVNPVATSESPSVVPPLPCSADLNAPGVSYHSSVEAALSRPRSYILPGTSNEELYGVMPVPSSEYGITRSLINREGFRRRYNMDGIAEVLLALERIEQDVELTHEQILMLESNLFLNGLNFYDQHRDMRLDIDNMSYESFAITTDLNENINNELLALEERMGTVSTALTEEALSECLKRSFYQPLPRDDEAESYDEYKDDTKCSICQEDYLVADEVGSLKCEHKYHVVCIQQWLRLKNWCPICKAPIEPSNSSSPSH 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0274 616 MobiDBLite consensus disorder prediction 261 373 - -
Lal17g0274 616 MobiDBLite consensus disorder prediction 97 185 - -
Lal17g0274 616 SUPERFAMILY RING/U-box 556 609 - -
Lal17g0274 616 SMART ring_2 562 602 IPR001841 -
Lal17g0274 616 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 547 615 IPR013083 -
Lal17g0274 616 MobiDBLite consensus disorder prediction 292 324 - -
Lal17g0274 616 Pfam Ring finger domain 561 603 IPR001841 -
Lal17g0274 616 MobiDBLite consensus disorder prediction 198 243 - -
Lal17g0274 616 ProSiteProfiles Zinc finger RING-type profile. 562 603 IPR001841 -
Lal17g0274 616 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 57 607 IPR045191 GO:0061630
Lal17g0274 616 MobiDBLite consensus disorder prediction 340 373 - -
Lal17g0274 616 Coils Coil 452 472 - -
Lal17g0274 616 MobiDBLite consensus disorder prediction 277 291 - -
Lal17g0274 616 MobiDBLite consensus disorder prediction 106 177 - -
Lal17g0274 616 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED 57 607 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0274 Lal-Chr17 1708657 1712353 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0274 426 603 C3H Transcription Factor Family AT2G15530 37.640 3.31e-30 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0274 - - gmx:100787213 760.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0274 17 1708657 1712353 Lal21g0377 21 2563289 2567054 LSH
Lal17g0274 17 1708657 1712353 Lal4g0255 4 1646651 1651072 LSH