Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0270 ATGGGTGGTATTAGCCTTGAGGAGATCAAAAACGAGAACGTTGATCTGGAACGGATTCCAGTTGAGGAAGTGTTTGATCAACTCAAATGTTCAAGAGAAGGTCTAACATCAGACGAAGGAGCCAACCGGCTTCAAGTTTTTGGTCCAAACAAATTGGAAGAGAAAAAGGAAAGCAAAGTTTTGAAGTTCTTGGGGTTTATGTGGAACCCTTTATCATGGGTCATGGAAGCTGCTGCTATCATGGCTATTGCTTTAGCTAATGGTAGTGGAAGGCCCCCTGATTGGCAGGATTTCGTCGGTATCATTGTTCTCTTGGTCATTAACTCCACAATCAGTTTTATCGAGGAAAACAACGCTGGCAATGCCGCTGCTGCACTCATGGCTGAGGATGTTAGGAAAAGGGCACATGCTACTATTGATAAGTTTGCTGAGCGTGGATTGCGGTCTTTAGGTGTTGCTAGACAGGAAGTACCCGAGAAAACGAAAGAGAGTCCTGGTGCACCATGGCAATTTGTTGGTCTGCTACCATTATTTGATCCTCCAAGGCATGATAGTGCTGAAACCATCACGAAAGCTCTGCACCTTGGTGTGAATGTTAAGATGATTACCGGGGATCAACTTGCCATTGCCAAGGAAACTGGCCGGAGGCTTGGGATGGGAACAAACATGTACCCATCTTCTTCTTTGCTTGGCCAACACAAGGATCCTGCTATTGAATCTCTTCCTGTTGATGAGTTGATTGAGAAGGCCGATGGATTCGCTGGAGTATTTCCTGAACACAAGTATGAAATTGTTAAGAGGCTACAAGACAGGAAGCATATATGTGGAATGACAGGTGATGGTGTCAACGACGCCCCTGCATTAAAGAGAGCAGATATTGGTATTGCCGTCGCTGATGCTACAGATGCTGCTAGAAGTGCTTCTGACATTGTCCTCACTGAACCTGGTCTGAGTGTCATCATTAGTGCAGTTCTCACCAGCAGGGCAATTTTCCAAAGAATGAAGAACTATACTATCTATGCTGTGTCAATCACTATTCGTATTGTGTTTGGTTTCATGTTTATTGCCTTGATCTGGAGGTTTGATTTTGCACCCTTTATGGTATTGATTATTGCCATATTAAATGATGGTACCATTATGACAATATCCAAGGATCGAGTGAAACCATCACCTATGCCCGATAGCTGGAAACTGAAGGAGATATTTGCTACTGGTGTTGTGCTAGGTAGTTACATGGCACTAATGACAGTGATATTTTTCTGGCTTATTAAGGATACCGACTTCTTCTCGGACAAATTTGGTGTTAGGTCTCTCAGAAATAACCCTGCAGAAATGATGGCAGCCCTATACCTACAAGTCAGTATTATAAGTCAGGCCCTTATTTTTGTTACTAGGTCCCGCAGCTGGTCCTATGTTGAAAGACCTGGTTTTCTCCTAATGGGCGCTTTTCTGATTGCTCAGCTGGTGGCAACTTTTCTAGCAGTATATGCTAATTGGAGTTTTGCAAGAATTAAGGGAATGGGATGGGGTTGGGCTGGTGTGATCTGGTTGTACAGTTTAGTGACTTATGTCCCTCTTGATATACTCAAATTCGCGATCGCCTATGCTCTCAGTGGGAAGGCTTGGAACACTCTTTTGGAGAACAAGACTGCCTTCACTACTAAGAAAGACTACGGCAAAGAAGAGAGAGAAGCTCAATGGGCAACTGCTCAGAGGACACTTCATGGTCTTCAGCCACCAGAAACAACCAACCTTTTCAATGACAAGAATAGCTATAGGGAGCTTTCTGAGATTGCAGAGCAAGCCAAAAGGCGTGCTGAGGTTGCAAGGCTTAGGGAGCTTCATACTCTAAAAGGGCATGTGGAATCAGTGGTGAAGCTGAAGGGACTAGACATTGATACAATCCAGCAGCATTACACTGTCTAA 1926 0.4413 MGGISLEEIKNENVDLERIPVEEVFDQLKCSREGLTSDEGANRLQVFGPNKLEEKKESKVLKFLGFMWNPLSWVMEAAAIMAIALANGSGRPPDWQDFVGIIVLLVINSTISFIEENNAGNAAAALMAEDVRKRAHATIDKFAERGLRSLGVARQEVPEKTKESPGAPWQFVGLLPLFDPPRHDSAETITKALHLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSSLLGQHKDPAIESLPVDELIEKADGFAGVFPEHKYEIVKRLQDRKHICGMTGDGVNDAPALKRADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMFIALIWRFDFAPFMVLIIAILNDGTIMTISKDRVKPSPMPDSWKLKEIFATGVVLGSYMALMTVIFFWLIKDTDFFSDKFGVRSLRNNPAEMMAALYLQVSIISQALIFVTRSRSWSYVERPGFLLMGAFLIAQLVATFLAVYANWSFARIKGMGWGWAGVIWLYSLVTYVPLDILKFAIAYALSGKAWNTLLENKTAFTTKKDYGKEEREAQWATAQRTLHGLQPPETTNLFNDKNSYRELSEIAEQAKRRAEVARLRELHTLKGHVESVVKLKGLDIDTIQQHYTV 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0270 641 Coils Coil 592 612 - -
Lal17g0270 641 SMART Cation_ATPase_N_a_2 15 87 IPR004014 -
Lal17g0270 641 PRINTS P-type cation-transporting ATPase superfamily signature 173 184 - -
Lal17g0270 641 PRINTS P-type cation-transporting ATPase superfamily signature 195 205 - -
Lal17g0270 641 PRINTS P-type cation-transporting ATPase superfamily signature 278 297 - -
Lal17g0270 641 PRINTS P-type cation-transporting ATPase superfamily signature 301 313 - -
Lal17g0270 641 SUPERFAMILY Calcium ATPase, transmembrane domain M 14 535 IPR023298 -
Lal17g0270 641 PANTHER PLASMA MEMBRANE ATPASE 128 621 - -
Lal17g0270 641 PANTHER PLASMA MEMBRANE ATPASE 1 128 - -
Lal17g0270 641 SUPERFAMILY HAD-like 170 324 IPR036412 -
Lal17g0270 641 Pfam Cation transporter/ATPase, N-terminus 19 81 IPR004014 -
Lal17g0270 641 PRINTS H+-transporting ATPase (proton pump) signature 135 153 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal17g0270 641 PRINTS H+-transporting ATPase (proton pump) signature 250 266 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal17g0270 641 PRINTS H+-transporting ATPase (proton pump) signature 278 294 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal17g0270 641 PRINTS H+-transporting ATPase (proton pump) signature 309 334 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal17g0270 641 PRINTS H+-transporting ATPase (proton pump) signature 450 471 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal17g0270 641 Gene3D - 590 641 - -
Lal17g0270 641 Gene3D - 278 536 - -
Lal17g0270 641 Gene3D - 66 153 - -
Lal17g0270 641 Gene3D - 170 239 IPR023214 -
Lal17g0270 641 PANTHER CALCIUM-TRANSPORTING ATPASE 128 621 - -
Lal17g0270 641 PANTHER CALCIUM-TRANSPORTING ATPASE 1 128 - -
Lal17g0270 641 Pfam haloacid dehalogenase-like hydrolase 170 292 - -
Lal17g0270 641 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 253 368 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0270 Lal-Chr17 1683793 1689009 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0270 129 641 Primary Pumps ATPases AT2G24520 84.795 0.0 914
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0270 K01535 - gmx:547525 947.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0270 17 1683793 1689009 Lal21g0375 21 2536758 2543743 LSH
Lal17g0270 17 1683793 1689009 Lal4g0253 4 1632116 1637767 LSH