Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0258 ATGTTTAGTTCAAAGAAAGAAGATGCCAAAATCGAAAAAGTAATTCGTGGTCTTCTCAAACTTCCTGCAAATCGAAGATGCATCAACTGCAATGCCTTGGGACCACAATATGTGTGTACAACTTTCAACACCTTTGTCTGCATAAATTGCAGTGGAATACATCGAGAATTTACCCATAGAGTAAAATCAGTATCCATGGCTAAATTTACGCCAGAAGAAGTATCTGCTCTTGAAGCAGGTGGCAATGAGAGAGCAAAGCAGATTTATTTTAAAGAATGGGATTCTCAGCGTCATTCTTACCCTGATTCCAATAATATGCACAGACTTCGTGACTTTATCAAGCATGTGTACGTGGATCGAAAATTTACAGGTGAAAGGGGTGCTGTGGTTCTTCCCAGGCTTAAATTGAAAGACAAGGAGGACCCCTATGAAAATAAGATTAGTTCATTTCGCTTGGAGTCCAAAAGTAGTCCACATTATGAAGACAGAATTGAAAGATATAACAGTGATAGATCAAGCCCTGGTATAAGAAGTGATGACAAGAGTCTTAGATTTTACTATGATGAAACTAGAAGTCCTAAGTATGCCCAAAGATGTGCAAAGCCTGGCACCTTTGGCAGAAGTCCTATAAAATTTGAGGTTGTTGATGACAGGTTCCGAGATGATGAATCTAGAAATCGCAGGCTTTCAAATCTGGAATCGAAGTTTAAACAGCTTCAACCTGACGTTCAGCAGAAGAATGTAGAAGGATCCCAAGCCTATGTTGCACGGCCTGTGAAGGAAGTATCAAATGAGAATGGTCCATCTCCAAAAGTAGGTGAACCTTTTAAACCACAAAATAAGGCAGCTGCACAAAGTCAGCTAAAGGTCATTGGTGATAGTTCTGCTGTGAAAAAACAATCTGAACAAAAAAATAATCCCCCAGAAAAATCTGGGGCCTCTGATACTGCTGCTGGACCAAAAACACAGTCTATACCACAATCAAGTGAAAACAATTGGGCCTCATTTGATGCTTTTACAGAAGTCGATGCGCCTGAAACTTCAATCTCAACTACCTTGACATCTTCTATAATAGAGGCAACACCTAAGGCGACATATGCAAATTCTTTAGATCTTTTACTTTCCGAATTATCAGGCCCATTGTCTGCAGCAACTGGTGCCATGTTTGGGGACTCAAGTAGTGGGAATAATCCAACAAATGCAACAGCAGGAAATGAGAGTGCTTGTGGGGATTTTAAGCACTTGCCACCTACTTCAATGGGGCAGACAACTGCAACACCCAACAATAGTGATGCTTTGTCAGTTACATCAACCACTGCCAATGAGATGAAACAACCTTCTACTGCAGCGCCTCCACAAGTTGATCTATTTAACATCGAAGATTGCGCTAAAGTTCCACAGCAGACATTACCAAGCATCCAATTTCCTCCTTCTACATCAGTTAGTAGCTCTATGACACAACCAAGTACACCAGTCAGATGTGTAGCTACGAATGATCTGCTATCAGATGTTCCAAATTCATGTGATTCCTTTGGTGCTCCTACTGAAGTATCTTCTCAAACCATCTCGAAGCCTGCTCAAGACACCAAACATGATGTTGGATCCCAAACTTCTTTGGTGGAAACCAAGCCTAGTGGAAGAATGGAACTTCCGGCGGACCTTTTCACTACAAGCTACTCATCTGGCCCTGCACCACTTACAGGTTGGCAGAATGTCCAACAGTGTGGCAAGGGATATGGCTTGCAGTATTATCCTAATGCAATGCCTCCCTCAGCATTCCCCTTTGCAGCAAAGTCCTTAAACCCATTTGAACAAACTGAGGGGAGACCTTTAGCTCATGCCTTATCATTTCCTACTCTGGCATCTCAGAATGGTGCACTACCTAATGCCTCACCCCTAATGCATTCTTCAAGCTTCAGTTCTTTAGGATCGATGTTGCCTCAGCCCCCAAGTTATGCATCTCCAATTGCTCCACAGTCAACCTTACCATCTGAATATCCTTCTAGTATTTCCCTTGTTATCCTTCCACTTCTTTTGAATAGTTCTTCTTCATTTGTTTTAGTCATAGTTATTTCTAACACAGTCCTTTCAGGTTTGTACTTTGGGCAAGTTAACAATAACATGCAACCTCCCAGGTACATCCTACTTTTGATCTTATTTTGGGTTCTTTCTAGTATAGCCACTTGGCTTATAAGCTGCAATGCATCTTCAATGGATCCCAAAGCACTCCAAATTCATATTCAAAGATGGGAGGAAACCCATTCGAAAGTGTTTGATGATTAG 2283 0.4148 MFSSKKEDAKIEKVIRGLLKLPANRRCINCNALGPQYVCTTFNTFVCINCSGIHREFTHRVKSVSMAKFTPEEVSALEAGGNERAKQIYFKEWDSQRHSYPDSNNMHRLRDFIKHVYVDRKFTGERGAVVLPRLKLKDKEDPYENKISSFRLESKSSPHYEDRIERYNSDRSSPGIRSDDKSLRFYYDETRSPKYAQRCAKPGTFGRSPIKFEVVDDRFRDDESRNRRLSNLESKFKQLQPDVQQKNVEGSQAYVARPVKEVSNENGPSPKVGEPFKPQNKAAAQSQLKVIGDSSAVKKQSEQKNNPPEKSGASDTAAGPKTQSIPQSSENNWASFDAFTEVDAPETSISTTLTSSIIEATPKATYANSLDLLLSELSGPLSAATGAMFGDSSSGNNPTNATAGNESACGDFKHLPPTSMGQTTATPNNSDALSVTSTTANEMKQPSTAAPPQVDLFNIEDCAKVPQQTLPSIQFPPSTSVSSSMTQPSTPVRCVATNDLLSDVPNSCDSFGAPTEVSSQTISKPAQDTKHDVGSQTSLVETKPSGRMELPADLFTTSYSSGPAPLTGWQNVQQCGKGYGLQYYPNAMPPSAFPFAAKSLNPFEQTEGRPLAHALSFPTLASQNGALPNASPLMHSSSFSSLGSMLPQPPSYASPIAPQSTLPSEYPSSISLVILPLLLNSSSSFVLVIVISNTVLSGLYFGQVNNNMQPPRYILLLILFWVLSSIATWLISCNASSMDPKALQIHIQRWEETHSKVFDD 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0258 760 Gene3D Arf GTPase activating protein 2 131 IPR038508 -
Lal17g0258 760 CDD ArfGap_AGFG 12 122 - -
Lal17g0258 760 MobiDBLite consensus disorder prediction 232 331 - -
Lal17g0258 760 MobiDBLite consensus disorder prediction 233 251 - -
Lal17g0258 760 SMART arf_gap_3 12 130 IPR001164 GO:0005096
Lal17g0258 760 MobiDBLite consensus disorder prediction 280 331 - -
Lal17g0258 760 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 130 IPR001164 GO:0005096
Lal17g0258 760 PANTHER ARFGAP/RECO-RELATED 1 657 IPR044820 GO:0005096
Lal17g0258 760 MobiDBLite consensus disorder prediction 512 538 - -
Lal17g0258 760 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Lal17g0258 760 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Lal17g0258 760 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Lal17g0258 760 Pfam Putative GTPase activating protein for Arf 13 124 IPR001164 GO:0005096
Lal17g0258 760 SUPERFAMILY ArfGap/RecO-like zinc finger 11 123 IPR037278 -
Lal17g0258 760 PANTHER ARFGAP/RECO-LIKE ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 657 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0258 Lal-Chr17 1597542 1601986 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0258 15 122 C2H2 Transcription Factor Family AT4G05330 38.053 2.79e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0258 - - lang:109327488 1192.95