Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0256 ATGAACGTTAAATCAGCGCATTCTTCATATCGTGATCGGACACATGAATTCGAAAGCATTGCGGAGAGGTTGAACAAATCACGATCACCTCCAATCATTAGTAATAGCTCTACCACTACCACTACCTCCGATGAACAGCGATCCTCCATTGCGGTTCAATCAGAATTCAATAGGAGAGCTTCCAAGATTGGCTATGCAATTCACCAAACCTCTCAGAAACTCGCTAACCTCGCTAAGCTGGCGAAGAGGAGTTCGGTGTTTGATGATCCGAGTATGGAAATACAAGAGCTTACGAGTGTTATAAAGCAAGATATCAATGCTCTTAATTCTGCTGTTGTTGATCTTCAATCATTCTCCATTTCACGAAATCAGAGTGGTGATGACACTACTAATCATTCAACTACTGTTGTTGATGACCTTAAGACTCGTTTGATGACCACCACCAAGGACTTCAAAGATGTTCTCACTATGCGAACTCAGAACTTGAAAGTGCATGAGAATAGGAGGCAATTGTTCTCATCCTCTGCTTCTAAGGAAACTGCAAATCCTTTTGTTCGACAACGTCCATTGGCTACAAGATCAGCAGCTAGTTCTTCTAATGCTGGTGGTGGTGGTGCACCACCATGGGCTAGTACCTCGGGTTCACCATCTTCATCTCAGCTCTTCCCTAAGAAGCCGGTGGATGGGGAGAGTCAACCATTGCTGCAACAACAGCAGCAACAGCAAGAGATGGTTCCATTGCAAGACAGTTACATGCAAAGCCGAGCTGAAGCTCTTCATAATGTTGAGTCCACTATTCATGAGCTAAGCAACATTTTTAATCAACTTGCAACACTTGTTTCTCAACAAGGAGAGGTTGCCATCAGGATTGATGAGAACATGGATGATACATTGGCAAACGTAGAGGGGGCACAAGGGGCTTTGCTGAAATACCTGAGCAGCATATCTTCTAATAGGTGGCTGATGATCAAGATTTTCTTTGTATTGATATTTTTCCTTATGGTTTTCTTATTTTTTGTTGCATAG 1026 0.4279 MNVKSAHSSYRDRTHEFESIAERLNKSRSPPIISNSSTTTTTSDEQRSSIAVQSEFNRRASKIGYAIHQTSQKLANLAKLAKRSSVFDDPSMEIQELTSVIKQDINALNSAVVDLQSFSISRNQSGDDTTNHSTTVVDDLKTRLMTTTKDFKDVLTMRTQNLKVHENRRQLFSSSASKETANPFVRQRPLATRSAASSSNAGGGGAPPWASTSGSPSSSQLFPKKPVDGESQPLLQQQQQQQEMVPLQDSYMQSRAEALHNVESTIHELSNIFNQLATLVSQQGEVAIRIDENMDDTLANVEGAQGALLKYLSSISSNRWLMIKIFFVLIFFLMVFLFFVA 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0256 341 ProSitePatterns Syntaxin / epimorphin family signature. 255 294 IPR006012 GO:0005484|GO:0006886|GO:0016020
Lal17g0256 341 MobiDBLite consensus disorder prediction 28 49 - -
Lal17g0256 341 SMART tSNARE_6 244 311 IPR000727 -
Lal17g0256 341 MobiDBLite consensus disorder prediction 191 245 - -
Lal17g0256 341 MobiDBLite consensus disorder prediction 22 49 - -
Lal17g0256 341 MobiDBLite consensus disorder prediction 166 245 - -
Lal17g0256 341 Pfam SNARE domain 286 337 IPR000727 -
Lal17g0256 341 PANTHER SYNTAXIN 2 340 IPR045242 -
Lal17g0256 341 CDD SNARE_syntaxin5 252 330 - -
Lal17g0256 341 Gene3D - 49 304 - -
Lal17g0256 341 SUPERFAMILY t-snare proteins 53 304 IPR010989 GO:0016020|GO:0016192
Lal17g0256 341 MobiDBLite consensus disorder prediction 166 182 - -
Lal17g0256 341 PANTHER SYNTAXIN-32-LIKE 2 340 - -
Lal17g0256 341 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 6 26 IPR021538 -
Lal17g0256 341 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 249 311 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0256 Lal-Chr17 1585942 1588787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0256 1 341 SNARE and Associated Proteins AT3G24350 63.043 5.37e-143 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0256 K08490 - gmx:100811494 447.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0256 17 1585942 1588787 Lal4g0240 4 1517926 1521453 LSH