Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0254 ATGGGAGTGGATTATTACAATATATTGGATGTAGAGAGAAATGCAAAAGAAGAAGATCTGAAGAAGGCATATAGAAAGTTAGTGATGAAATGGCACCCTGACAAGAATCCTACAAACAAAAAAGAAGCTGAAGCTAATTTCAAACAAATCTCTGAGGCCTATGAGGTATTAAGTGATCCTCAGAAAAGGGCAGTTTATGATCAATATGGAGAAGAAGGGTTGAAAGATAGGCCACCACCTGGTTATGAACCAAGTGGTTTTAATCCAAGAAATGCAGAAGATATTTTTGCAGAATTCTTTGGAAGTAGCCCTTTTGGATTTAGTTCATCAGGACCAGGCAGGTCTATGAGATTTCAATCTGATGGAGGAGCAGGAACATTTGCTGGATTTAATGCATCTGATAATCTTTTTAGAACATATAGTGAGAGGCCCTATATGCCAAAGAAGCCACCACCTGCTGAGAGCAAATTGCCTTGCACTTTGGAAGAGTTGTACTCTGGATCTACTAGGAAAATGAAGATTTCAAGGACTGTCATGGATGCTAATAAAAGGGCAGTTCCAGAAACCGAAATATTAACCATAGAGGTAAAACCAGGTTGGAAGAAAGGTACAAAGATAACATTTCCAGATAAAGGAAACCAACAACCAAATCAACTAGCAGCGGACCTTGTATTTGTGATTGATGAGAAGCCTCATGATTTTTTCAAAAGAGATGGGAATGATCTCATTGTGAGTCAAAGAGTGTCACTAGCTGAGGCTATTGGTGGAACAACAATAAATATCACAACACTTGATAAACGTACTTTGTCTATACCAGTGACTGATATTGTAAGCCCTGGCTATGAGCTTGTTATTGCAAAAGAAGGAATGCCAATAACAAAGGAGAGAGGTCATAGAGGTGACTTGAGGATCAAGTTTGAAGTTAAGTTCCCTACAAGATTAACACCAGAGCAAAGAGCAGGACTTAAGAGAGCATTGGGAGCTTGA 987 0.3901 MGVDYYNILDVERNAKEEDLKKAYRKLVMKWHPDKNPTNKKEAEANFKQISEAYEVLSDPQKRAVYDQYGEEGLKDRPPPGYEPSGFNPRNAEDIFAEFFGSSPFGFSSSGPGRSMRFQSDGGAGTFAGFNASDNLFRTYSERPYMPKKPPPAESKLPCTLEELYSGSTRKMKISRTVMDANKRAVPETEILTIEVKPGWKKGTKITFPDKGNQQPNQLAADLVFVIDEKPHDFFKRDGNDLIVSQRVSLAEAIGGTTINITTLDKRTLSIPVTDIVSPGYELVIAKEGMPITKERGHRGDLRIKFEVKFPTRLTPEQRAGLKRALGA 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0254 328 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Lal17g0254 328 Pfam DnaJ domain 4 67 IPR001623 -
Lal17g0254 328 CDD DnaJ 4 59 IPR001623 -
Lal17g0254 328 SUPERFAMILY Chaperone J-domain 3 109 IPR036869 -
Lal17g0254 328 PANTHER DNAJ HEAT SHOCK FAMILY PROTEIN 1 327 - -
Lal17g0254 328 Gene3D - 231 328 - -
Lal17g0254 328 Gene3D - 153 230 - -
Lal17g0254 328 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Lal17g0254 328 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 327 - -
Lal17g0254 328 PRINTS DnaJ domain signature 6 24 IPR001623 -
Lal17g0254 328 PRINTS DnaJ domain signature 24 39 IPR001623 -
Lal17g0254 328 PRINTS DnaJ domain signature 42 62 IPR001623 -
Lal17g0254 328 PRINTS DnaJ domain signature 62 81 IPR001623 -
Lal17g0254 328 SUPERFAMILY HSP40/DnaJ peptide-binding domain 154 233 IPR008971 GO:0006457|GO:0051082
Lal17g0254 328 SMART dnaj_3 3 62 IPR001623 -
Lal17g0254 328 Gene3D DnaJ domain 3 110 IPR036869 -
Lal17g0254 328 CDD DnaJ_C 154 314 - -
Lal17g0254 328 SUPERFAMILY HSP40/DnaJ peptide-binding domain 234 320 IPR008971 GO:0006457|GO:0051082
Lal17g0254 328 Pfam DnaJ C terminal domain 154 311 IPR002939 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0254 Lal-Chr17 1579459 1582544 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0254 5 113 C2H2 Transcription Factor Family AT1G74250 30.088 6.79e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0254 K09510 - gmx:100796426 527.324