Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0250 ATGTCTCACCTGCATAATCAAAATGCCAACAACAACAAAAGTGAAGAACAACAACACATAGTTCTACATGACTTTCTTGGCATGAAGAAGTTTCCTGATTCTACTCAAAACCCTCACTCGAGACTCTCTCAGCCTTCACCCTCTTCAGTATCACGTGCCCCCTTCTCTGACATCGCTTCTCAAAAACAGGTAGGAAATCACCTTGAGGGAGTTCCGTTCTATGGCCCAAGGAGCGATTTTTCTGGCACTGAGATTAGTAGCAGACTAGTAGGAAACAAGAGAAGTAATTCTGATTCTACTTTTATTGGTTCCTCTAGAGATGCCTTCCAAATGGTCCCTGATTCTTTTCATAACTCACATTTAATGAAGATGCTCCGGAATGCAGGCGGAGGAGGAGAGCAAGTTAGAAGGCCCAATGATGATGATGTGTTACGTGGTATGCAGTCAATGAAGCCGACTTCAGCTTCTCAGATATTCCAGCCTCTCAATGGCACTAAAGGTGATGCCAGTAAATGGGAGCGATCTATTCTCATACAGCATCCACAGCATGGAGGGCAATTGGCACCTTTTGTCCACCAAATAACTTCAAACAAGCTTAGGGATGCCAATGCTGGTCCTTCATTTATTTCTCAGGCAGCTGCTGATGAAGGATCTAGAACCGGAATCAAGTGCCCTGGAATCTTAAATTCTATGAACACAACCACTACTGCCCCTGAGAAAATGTCACCTGCAGTGCTGCTTGGTGGAAGCAGACCAAAGCATGTAACTAATGTAATGGATCCAGAATCTTCTACACCTCAGAGTCAACGCCAGATGACTATTTTTTATGGAGGTCAAGCTCATGTTTTTGATTATGTCCACCCTCATAAGGCAGATGTTATAATGTCCTTAGCTGGGTCAAATGGTGGATCTTGGTCCACAGCGTTCACACCAAAATCTGCTGGAAAGCTCCTTAGTGATAGCAACTTGAACAGTGGAGAAAATGAAACAGGTATGGTGAATAATGTGCCATTACCACATGAGCTTCATGGGAGATTGCCTATTACTGCAAGTTCTAGCCATGCCGTTGGGCCCAGTGATCGAGGGACACAGCAAGGAAGCTTTGTAGGTAAAGATACAAGAAAGCATGTTGAAGGAGCAGATCCGAATTCAGAAGCCTGA 1161 0.4427 MSHLHNQNANNNKSEEQQHIVLHDFLGMKKFPDSTQNPHSRLSQPSPSSVSRAPFSDIASQKQVGNHLEGVPFYGPRSDFSGTEISSRLVGNKRSNSDSTFIGSSRDAFQMVPDSFHNSHLMKMLRNAGGGGEQVRRPNDDDVLRGMQSMKPTSASQIFQPLNGTKGDASKWERSILIQHPQHGGQLAPFVHQITSNKLRDANAGPSFISQAAADEGSRTGIKCPGILNSMNTTTTAPEKMSPAVLLGGSRPKHVTNVMDPESSTPQSQRQMTIFYGGQAHVFDYVHPHKADVIMSLAGSNGGSWSTAFTPKSAGKLLSDSNLNSGENETGMVNNVPLPHELHGRLPITASSSHAVGPSDRGTQQGSFVGKDTRKHVEGADPNSEA 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0250 386 MobiDBLite consensus disorder prediction 29 53 - -
Lal17g0250 386 SMART tify_2 265 300 IPR010399 -
Lal17g0250 386 MobiDBLite consensus disorder prediction 349 386 - -
Lal17g0250 386 ProSiteProfiles Tify domain profile. 265 300 IPR010399 -
Lal17g0250 386 MobiDBLite consensus disorder prediction 33 53 - -
Lal17g0250 386 MobiDBLite consensus disorder prediction 352 370 - -
Lal17g0250 386 PANTHER PROTEIN TIFY 8 49 385 - -
Lal17g0250 386 Pfam tify domain 266 299 IPR010399 -
Lal17g0250 386 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 49 385 IPR040390 -
Lal17g0250 386 MobiDBLite consensus disorder prediction 371 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0250 Lal-Chr17 1553185 1557163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0250 13 298 Tify Gene Family AT4G32570 36.393 5.56e-44 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Lal17g0250 tify 2.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0250 - - lang:109327803 600.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0250 17 1553185 1557163 Lal17g0250 17 1553185 1557163 ECH
Lal17g0250 17 1553185 1557163 Lal21g0356 21 2425539 2429891 LSH