Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0247 ATGTCTCAAACTAACTGGGAAGCTGATAAGATGTTAGATGTTTACATCCATGATTACCTAGTAAAGAGAGATTTGAAGGCTTCTGCTCAAGCTTTTCAAGCTGAAGGAAAAGTCTCCTCTGACCCAGTTGCTATTGATGCTCCGGGAGGTTTTTTGTTCGAGTGGTGGTCGGTTTTCTGGGACATATTTATTGCCAGGACTAATGAGAAGCACTCAGAGGTTGCTGCATCTTATATTGAGAAACAATTAATTAAGGCAAGGGAGCAACAGCAGCAGCCACAATCCCAGCAGTCACAGCATCAACAGCAGCAGCAACACATGCAGATGCAACAGCTCTTGATGCAGAGGCACGCTCAACAGCAACAACAGCAGCAGCAGCAACAACAACAACAGCAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAACAACAGCAGCAGCAGCCACCCCAACAACAGCAAAGCACAGATAGAGCTCACCTCTTAAATGGCAGTACAAATGGGTTAGTTGGAAACTCTGGAACTGCAAATGCACTAGCAACAAAGATGTATGAGGAAAGGTTAAAGTTGCCCCTTCAGAGAGATTCTTTGGATGATGCAGCAATAAAGCAAAGATTTGGTGAGAACATGGGTCAACTGTTGGACCCAAATCATCCTTCATTATTGAAGTCACCTGCAGCTCCTGGCCAGCCGTCAGGGCAAGTTTTGCTTGGTGCTGGTGGTGGGATGTCTCCACAATTCCAAGCTCGTAGTCAGCAATTGCCGGGGTCTACTCCTGATATAAAGAGTGAGATTAATCCTGTTTTAAATCCCAGAGCTGTGGGTCCCGAAGGATCATTGCTAGCAATTCCTGGATCAAATCAAGGTGGCAACAATTTGACTCTGAAAGGGTGGCCGCTCACAGGTTTAGAGCAACTACGCTCTGGTCTACTCCAGCAACAAAAACCTTTCATTCAGGCTCCTCAGCCTATTCATCAACTTCAAATGTTGACACCACAGCAGCAGCTTATGTTTGCCCAACAAAATTTAGCATCACCATCAGTCAGTGATGAAAGTAGAAGACTCAGAATGCTCTTGAATAATAGGAGTATGAGCCTAAATAAGGATGGTCTTTCAAATTCTGTTGGTGATGTAGTATCAAACATTGGATCACCTCTTCAAGGTGGTGCCCCCTCGTTTGGGCGTGGAGATACAGATATGCTAATGAAGTTGAAATTGGCTCAGTTACAGCATCAGCAACAGCTGAACACCAATCCACAGCAGCAGCAACTTCAACAACCTGCTCTTTCGAATCAGCAATCTCAGCCTTCCAATCATAACATCCATCAGCAAGATAAAGTAGGGGGAGGTGGTGGCAGTGGCACCGTTGATGTTAACATGTCGAACTCCTTTAGAGGAAATGATCAGGTTTCAAAAAACCAGATGGGGAGAAAGAGAAAGCAGCCTGTATCTTCTTCAGGTCCTGCCAATAGCACAGGAACAGCAAATACAACTGGGCCATCACCAAGTTCCGCACCCTCTACTCCCTCTACACATACGCCTGGAGATGTGATATCAGTGCCTGCCTTGCCTCATAGTGGTAGTTCTTCAAAGCCTTTAATGATGTTCGGCATTGATGGCACTGGAAATCTTACATCACCTTCAAACCAGCTGGCTGATGTGGATCGGTTTGTGGACGATGGATCGCTTGATGAAAATGTCGAGTCTTTTTTATCCCATGATGATACAGACCCTAGAGATACAGTTGGTCGCTGTATGGATGTAAGCAAAGGTTTCACATTTTCTGAATTAAATTCTGTCCGTGCAAGCACAAGCAAAGTTGTCTGTTGCCACTTTTCATCTGATGGGACATTGCTTGCAAGTGGTGGCCATGACAAAAAGGCTGTTTTGTGGCACACGGATTCTCTAAAGCAAAAAGCTACTCTTGAAGAGCATTCATCTTTGATTACTGATGTCCGTTTCAGTCCAAGCTTGCCTCGGCTGGCAACATCTTCATTTGACAAAACAGTCAGGGTTTGGGATGTTGAGAACCCTGGGTATTCGCTTCGGACCTTTACAGGACATTCGGCAGCTGTTATGTCAATAGATTTTCACCCCAATAAAGATGACCTTATCTGCTCTTGTGACGGTGATGGTGAAATACGATATTGGAGTATAAACAATGGCAGTTGTGCTAGAGTCTCCAAGGGTGGCACTATCCAGGTGAGATTCCAACCCCGTCTAGGGAGGTACCTTGCTGCAGCTGCAGAGAATGTTGTGTCTATACTTGATGTTGAGACACAAGCATGCCGATATTCATTAAAGGGACACACAAAGCCAATACACTCTGTATGTTGGGACCCTTCTGGGGAGTTGCTGGCATCTGTGAGCGAAGACTCTGTCAGGGTTTGGACTCTCGGAACAGGGAGTGAAGGGGAATGTGTACATGAGCTCAGCTGCAATGGCAGTAAGTTTCACTCATGTGTTTTCCACCCAACATATCCTTCATTGCTGGTCATTGGTTGCTACCAGTCATTGGAGCTGTGGAACATGAGTGAGAACAAGACAATGACACTTTCTGCTCATGAAGGTCTTATTGCTGCCTTGTCTGTTTCAACTGTAAATGGTCTAGTTGCTTCTGCCAGTCATGACAAGTTTATCAAGCTCTGGAAGTGA 2655 0.455 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIEKQLIKAREQQQQPQSQQSQHQQQQQHMQMQQLLMQRHAQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQPPQQQQSTDRAHLLNGSTNGLVGNSGTANALATKMYEERLKLPLQRDSLDDAAIKQRFGENMGQLLDPNHPSLLKSPAAPGQPSGQVLLGAGGGMSPQFQARSQQLPGSTPDIKSEINPVLNPRAVGPEGSLLAIPGSNQGGNNLTLKGWPLTGLEQLRSGLLQQQKPFIQAPQPIHQLQMLTPQQQLMFAQQNLASPSVSDESRRLRMLLNNRSMSLNKDGLSNSVGDVVSNIGSPLQGGAPSFGRGDTDMLMKLKLAQLQHQQQLNTNPQQQQLQQPALSNQQSQPSNHNIHQQDKVGGGGGSGTVDVNMSNSFRGNDQVSKNQMGRKRKQPVSSSGPANSTGTANTTGPSPSSAPSTPSTHTPGDVISVPALPHSGSSSKPLMMFGIDGTGNLTSPSNQLADVDRFVDDGSLDENVESFLSHDDTDPRDTVGRCMDVSKGFTFSELNSVRASTSKVVCCHFSSDGTLLASGGHDKKAVLWHTDSLKQKATLEEHSSLITDVRFSPSLPRLATSSFDKTVRVWDVENPGYSLRTFTGHSAAVMSIDFHPNKDDLICSCDGDGEIRYWSINNGSCARVSKGGTIQVRFQPRLGRYLAAAAENVVSILDVETQACRYSLKGHTKPIHSVCWDPSGELLASVSEDSVRVWTLGTGSEGECVHELSCNGSKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLSAHEGLIAALSVSTVNGLVASASHDKFIKLWK 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0247 884 SUPERFAMILY WD40 repeat-like 595 884 IPR036322 GO:0005515
Lal17g0247 884 SMART WD40_4 635 674 IPR001680 GO:0005515
Lal17g0247 884 SMART WD40_4 760 798 IPR001680 GO:0005515
Lal17g0247 884 SMART WD40_4 593 632 IPR001680 GO:0005515
Lal17g0247 884 SMART WD40_4 804 843 IPR001680 GO:0005515
Lal17g0247 884 SMART WD40_4 678 718 IPR001680 GO:0005515
Lal17g0247 884 SMART WD40_4 845 884 IPR001680 GO:0005515
Lal17g0247 884 MobiDBLite consensus disorder prediction 411 526 - -
Lal17g0247 884 Coils Coil 109 148 - -
Lal17g0247 884 MobiDBLite consensus disorder prediction 89 116 - -
Lal17g0247 884 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 852 884 - -
Lal17g0247 884 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 685 723 - -
Lal17g0247 884 ProSiteProfiles Trp-Asp (WD) repeats profile. 642 677 IPR001680 GO:0005515
Lal17g0247 884 ProSiteProfiles Trp-Asp (WD) repeats profile. 767 807 IPR001680 GO:0005515
Lal17g0247 884 Pfam WD domain, G-beta repeat 599 631 IPR001680 GO:0005515
Lal17g0247 884 Pfam WD domain, G-beta repeat 639 674 IPR001680 GO:0005515
Lal17g0247 884 Pfam WD domain, G-beta repeat 763 797 IPR001680 GO:0005515
Lal17g0247 884 Pfam WD domain, G-beta repeat 847 884 IPR001680 GO:0005515
Lal17g0247 884 Pfam WD domain, G-beta repeat 681 718 IPR001680 GO:0005515
Lal17g0247 884 Pfam LisH 10 36 IPR006594 GO:0005515
Lal17g0247 884 ProSiteProfiles Trp-Asp (WD) repeats profile. 685 727 IPR001680 GO:0005515
Lal17g0247 884 MobiDBLite consensus disorder prediction 411 444 - -
Lal17g0247 884 MobiDBLite consensus disorder prediction 455 515 - -
Lal17g0247 884 MobiDBLite consensus disorder prediction 225 261 - -
Lal17g0247 884 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 642 677 - -
Lal17g0247 884 MobiDBLite consensus disorder prediction 245 261 - -
Lal17g0247 884 CDD WD40 600 884 - -
Lal17g0247 884 SMART Lish 8 40 IPR006594 GO:0005515
Lal17g0247 884 ProSiteProfiles Trp-Asp (WD) repeats profile. 600 641 IPR001680 GO:0005515
Lal17g0247 884 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Lal17g0247 884 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 884 IPR044716 GO:0003714
Lal17g0247 884 Gene3D - 516 726 IPR015943 GO:0005515
Lal17g0247 884 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 1 884 - -
Lal17g0247 884 Gene3D - 727 884 IPR015943 GO:0005515
Lal17g0247 884 ProSiteProfiles Trp-Asp (WD) repeats profile. 852 884 IPR001680 GO:0005515
Lal17g0247 884 ProSitePatterns Trp-Asp (WD) repeats signature. 661 675 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0247 Lal-Chr17 1535433 1544371 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0247 679 883 Miscellaneous Gene Families AT5G08390 25.238 7.74e-13 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Lal17g0247 WD40 0.11 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0247 - - gmx:100816263 1197.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0247 17 1535433 1544371 Lal21g0355 21 2415742 2425163 LSH
Lal17g0247 17 1535433 1544371 Lal4g0230 4 1445768 1453798 LSH