Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0246 ATGGAGGAAATTGATGAAGGGGTTAATGGCAGTGAAAGTAAGAGTTCTTTCGAAGGTCTACCTCCCAATCCAACTGCTGCTACTGTTTATCGCCAAATCACTCGCAATGATCCTTTGGTCCTTCCATGCAAAAATTCCCTTGTTCGTCATTCTTCTCTTGAACAGGCTTTTAGCCATTTGATGGGCACCTCTGAAAAGATAGAGGCAAAGTTGTCTGATGTATCTGCTGAGCCAGGGCGTGTCACTGAAGAGTGTCAGTCTGATTTCCTTCCAGAACTTCGTTCCGGGGCATATGCTGATATTGGGTTCAGATCAACTATGGAAGATGCATATATTTGTGTTGACAATTTTATGCAGAATTTTGGGTCTAAGAAGCATATAGATGGACCGAGTGCTTTCTATGCGTTCACATGGTCTATTTTGTCTGGTAATACTGTGTTGCTGTACCTGTTTTATGGGCATGTATTTGATGGACATGGTGGAAAGAATGCTGCAGACTTTGCTTGCCATCATTTGCTGAAGTTCATTCTCGAGGATGAAACTTTCCCATGTGATATTGAAAGGACAGTTACTTCAGCATTTCTGCAAACAGACAATGCCTTTGAAAAAGCTTGCTCTTTGGATGCTGCCCTTGCATCTGGCACCACTGCATTGGCTGCGCTTGTCATCGGAAGGTCAGGTCCAAAAGCCAGAAATCATTGGAACCTCATAGAGGTTCAGATACAGTTTGGCCTACCTCAAAAATTGTCCATGTTGCTGGTGGTGGCAAATGCTGGAGATTGTCGAGCAGTGCTTTGCCATAATGGGAAAGCAATCGAAATGTCTAGAGATCATAAACCGGCTTGCAGCAAAGAGAAGAAGCGTATTGAGGCATCTGGTGGGTATGTCTATGATGGATATCTTAATGGACAACTTAATGTTGCTCGCGCCCTTGGTGACTGGCACATGGAAGGAATGAAAGGCAGAGATGGCGGACCACTCAGCGCAGAACCTGAACTTATGACTATAAAACTCACTGCTGAGGATGAATTTCTCATCATAGGCTGCGATGGGATATGGGATGTATTCAGGAGCCAAAATGCAGTGGATTTTGCTCGACGCAGGCTTCAGCTGCACAACGATCCCATCATGTGTAGTAAGGATCTGGTTGATGAGGCTCTAAAGAGAAAGAGTGGAGACAATTTATCTGCTGTTGTGGTTTGCTTCCAGCAGCAGCCTCCACCTAACTTGGTGGCTCCACGCTCTAGAGTGCATAGGAGCTTCTCTGCTGAAGGATTGAGGGAGTTGCAAAGCTTCTTGGATGGCTTGGATAATTGA 1317 0.4503 MEEIDEGVNGSESKSSFEGLPPNPTAATVYRQITRNDPLVLPCKNSLVRHSSLEQAFSHLMGTSEKIEAKLSDVSAEPGRVTEECQSDFLPELRSGAYADIGFRSTMEDAYICVDNFMQNFGSKKHIDGPSAFYAFTWSILSGNTVLLYLFYGHVFDGHGGKNAADFACHHLLKFILEDETFPCDIERTVTSAFLQTDNAFEKACSLDAALASGTTALAALVIGRSGPKARNHWNLIEVQIQFGLPQKLSMLLVVANAGDCRAVLCHNGKAIEMSRDHKPACSKEKKRIEASGGYVYDGYLNGQLNVARALGDWHMEGMKGRDGGPLSAEPELMTIKLTAEDEFLIIGCDGIWDVFRSQNAVDFARRRLQLHNDPIMCSKDLVDEALKRKSGDNLSAVVVCFQQQPPPNLVAPRSRVHRSFSAEGLRELQSFLDGLDN 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0246 438 Pfam Protein phosphatase 2C 152 394 IPR001932 -
Lal17g0246 438 PANTHER PROTEIN PHOSPHATASE 2C 27-RELATED 253 424 - -
Lal17g0246 438 PANTHER PROTEIN PHOSPHATASE 2C 27-RELATED 82 226 - -
Lal17g0246 438 PANTHER PROTEIN PHOSPHATASE 2C 82 226 IPR015655 GO:0004722|GO:0006470
Lal17g0246 438 PANTHER PROTEIN PHOSPHATASE 2C 253 424 IPR015655 GO:0004722|GO:0006470
Lal17g0246 438 CDD PP2Cc 94 402 IPR001932 -
Lal17g0246 438 ProSiteProfiles PPM-type phosphatase domain profile. 94 402 IPR001932 -
Lal17g0246 438 MobiDBLite consensus disorder prediction 1 23 - -
Lal17g0246 438 SUPERFAMILY PP2C-like 89 404 IPR036457 -
Lal17g0246 438 SMART PP2C_4 84 400 IPR001932 -
Lal17g0246 438 Gene3D - 74 406 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0246 Lal-Chr17 1529036 1532743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0246 1 438 PP2C-type Phosphatase Gene Family AT2G25620 59.382 8.78e-178 500
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0246 K14803 - gmx:100815725 564.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0246 17 1529036 1532743 Lal21g0353 21 2407192 2410491 LSH