Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0245 ATGTGGAAACGTGGTGCAAAGAAATCATTTTCAACATTGTGTGATACCTTCCATCATGAAGAAACAACAGAAGAAGGTGACGATAAAGAGACAAATCGCATTGAATTGGATCAGATATCAAAGGATGAAGGTAGCCAATATAGCCTTACCGGCCTCCCTCTTCCTCCTCTCGGCGCCACCGCCGCCACTAACCGGAGACATAAACTTCGACCTTTCATTATCTCCCCATATAACTCTCGCTATAGATTATGGGAATCGTTCTTGGTGGTGTTGGTTTTCTATACTGCATGGGTGTGCCCGTTTGAATTTGGATTCCTTATTGAACCAAAGATTGGTCTTTCGGTAACAGATAATGTGGTGAATGCAATCTTTGCAATTGACATAGTTCTCACCTTCTTTGTTGCCTATCTAGACAAGGCTACTTATCTGCTCATTGATAAACCAAAACTCATTGCTTGGAGATATACAAGAACATGGCTAGCTTTTGATGTCATCTCTTCAATCCCTTCTGAACTAGCCCGCAAGATATTGCCCAGTTCTCTCAAGACTTATGGCCTCTTCAACATGCTTCGCCTTTGGCGTCTTCGTAGAGTTAGTGCCATGTTTGAAAGATTAGAAAAGGACAGGCATTATAGCTACTTCTGGGTGCGCTGCTCAAAACTTATATGTGTTACTCTATTTACAACACACTTTGCTGCTTGCCTTTTCTATTTTATTGCCGCACATAAAGAACTAAAAAGTACATGGCTGAGCTTAGGTGCTGATAGTGCTAATGACTCTATTTGGGGTCTCTATGTAACATCAATGTACTGGTCCATAACGACCTTATCAACTGTTGGTTATGGTGATCTGCATCCAGTAAATACAGGGGAGATGGTGTTTGACATATTCTTTATGCTCTTTAACCTGGGGCTAACTTCATATATTATAGGAAACATGACAAACTTGGTTGTCCAATTGACCAGCAGAACTAGGAAATATAGAGATACTGTGAATGCTGCTTCAGGTTTTGCCCAACGGAATCAATTATCTATCCGGTTGCAAGAACAGATGCTTGCACATTTGTTTATGAAGTACAGAACAGATTCAGAAGGATTGCAGCAGCAAGAGATTGTTGATTCTCTTCCAAAAGCTATCCGATCTAGCATCGCACAGTATCTATTCGATATACACGTGAAGAATGTGTACTTGTTTCATGGAGTGTCAGAGGACCTACGTTTTCAACTGGTCACGGAGATGAAGGCCGAGTATTTTCCTCCAAGGGAAGATGTGATTTTGCATAATGAAGCACCAACAGACTTGTATATATTGGTCACAGGTGCAGCAGTCATTGGTGAGGCACGTCCAACTGATGTACTTGGAGAAATAGGAGTTCTATGTTACAGGCCACAACTGTTTACAGTTCGGACCAAACGATTGACCCAACTTCTGCGCTTGAACCGTACCACATTTCTAAATCTTGCTCAATCAAATGTTGGAGATGGGACAATAATCATGAACAATTTTCTACATCATTTGCGAGAATCAAAGTTTCCAGGGATGGAAGTCGTTCTGGCAGAAACAGAGGCCATGCTGGCTCGGGGGAAAATGGAACTGCCCCTTAGCACATGTTTTGCTGCAGAAAGAAATGATGATATATTGTTACACAGGTTGCTGAAGAAGGGTTCAAATCCAAATGAAGTAGATAAGGAAGGAAAGACAGCACTGCATCATGCAGCTTCTAAAGGCAATGAGCATTGTGTACTTCTGCTTCTAGAATATGGTGCTGATCCCAATATAAAAGATTTGGAAGGAAGTGTTCCACTGTGGGAAGCAAGGTTGATTAGGCAAACAACCATCATGAAACTTCTTATAGACAATGGTGCAGACATATCTTGTGCTAATCCAGGCCATGTAGCATGCACTGCTGCCGCGCAAAATAACTTAGAATTGCTCAAGGAAGTTGTTCAATATGGATTTGATGTGACACAACCCAATAGAAATGGAACGACTGCTCTTCATGCCGCAGTATGTGAAGGAAACACTGAAATGGTTCAGTTCCTTGTAGACCAAGGAGCAAGCATTGATAAGAAAGATGAAAATGGATGGACTCCCAGGGTTTTGGCAGATCAACAAGGCCATGAAGAAATTCAAAACATATTCAACAACAGTAATGCGAACAGAAAACCACCTGATAGTCCTCCATCATTACCAAATAATGACAACAAGAGCTTTATGAGGTTTAAAAGTGAACCAGGTATGTCTCTTCTTTCCAAAGCAAACATGCAACATAAGCAAGACTTGAAGTTGGAGAATCAAGAGATGCTAATAAGATCCAGAAGTTTCCATAATTCCATTTTTGGGATGATCTCAGCAGCCAATCGTGGTAAAGGAGCTTGCATGGCAGCTGAAAACAATAGCACTAGTACGAGGGGCATGCATGAAGTAGTAGCACCCAGAGTGATACTTAGTTGTCCTGAAAAAGGAGCACATGCTGGTAAGCTTGTTTTGTTGCCCAAGTCCCTCCAAGAACTGCTAGATATTGGTGCAAAAAAGTTTAATTTCTCTCCCACCAAAGTTTTGACCAAAGAAGGAGCTGAAATTGAGGACATAAATCTTATTAGAGATGGTGATCATCTTATTGTTGCACAGGACTGA 2637 0.4133 MWKRGAKKSFSTLCDTFHHEETTEEGDDKETNRIELDQISKDEGSQYSLTGLPLPPLGATAATNRRHKLRPFIISPYNSRYRLWESFLVVLVFYTAWVCPFEFGFLIEPKIGLSVTDNVVNAIFAIDIVLTFFVAYLDKATYLLIDKPKLIAWRYTRTWLAFDVISSIPSELARKILPSSLKTYGLFNMLRLWRLRRVSAMFERLEKDRHYSYFWVRCSKLICVTLFTTHFAACLFYFIAAHKELKSTWLSLGADSANDSIWGLYVTSMYWSITTLSTVGYGDLHPVNTGEMVFDIFFMLFNLGLTSYIIGNMTNLVVQLTSRTRKYRDTVNAASGFAQRNQLSIRLQEQMLAHLFMKYRTDSEGLQQQEIVDSLPKAIRSSIAQYLFDIHVKNVYLFHGVSEDLRFQLVTEMKAEYFPPREDVILHNEAPTDLYILVTGAAVIGEARPTDVLGEIGVLCYRPQLFTVRTKRLTQLLRLNRTTFLNLAQSNVGDGTIIMNNFLHHLRESKFPGMEVVLAETEAMLARGKMELPLSTCFAAERNDDILLHRLLKKGSNPNEVDKEGKTALHHAASKGNEHCVLLLLEYGADPNIKDLEGSVPLWEARLIRQTTIMKLLIDNGADISCANPGHVACTAAAQNNLELLKEVVQYGFDVTQPNRNGTTALHAAVCEGNTEMVQFLVDQGASIDKKDENGWTPRVLADQQGHEEIQNIFNNSNANRKPPDSPPSLPNNDNKSFMRFKSEPGMSLLSKANMQHKQDLKLENQEMLIRSRSFHNSIFGMISAANRGKGACMAAENNSTSTRGMHEVVAPRVILSCPEKGAHAGKLVLLPKSLQELLDIGAKKFNFSPTKVLTKEGAEIEDINLIRDGDHLIVAQD 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0245 878 Pfam Ankyrin repeats (3 copies) 611 692 IPR002110 GO:0005515
Lal17g0245 878 Pfam Ankyrin repeats (3 copies) 538 595 IPR002110 GO:0005515
Lal17g0245 878 Gene3D - 533 716 IPR036770 -
Lal17g0245 878 ProSiteProfiles Ankyrin repeat profile. 564 596 IPR002110 GO:0005515
Lal17g0245 878 MobiDBLite consensus disorder prediction 715 740 - -
Lal17g0245 878 PRINTS Ankyrin repeat signature 565 580 IPR002110 GO:0005515
Lal17g0245 878 PRINTS Ankyrin repeat signature 613 627 IPR002110 GO:0005515
Lal17g0245 878 Gene3D Jelly Rolls 365 512 IPR014710 -
Lal17g0245 878 CDD CAP_ED 397 491 IPR000595 -
Lal17g0245 878 ProSiteProfiles Ankyrin repeat region circular profile. 661 693 - -
Lal17g0245 878 Pfam KHA, dimerisation domain of potassium ion channel 813 874 IPR021789 -
Lal17g0245 878 PRINTS EAG/ELK/ERG potassium channel family signature 94 101 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lal17g0245 878 PRINTS EAG/ELK/ERG potassium channel family signature 117 127 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lal17g0245 878 PRINTS EAG/ELK/ERG potassium channel family signature 128 137 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lal17g0245 878 PRINTS EAG/ELK/ERG potassium channel family signature 265 282 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lal17g0245 878 PRINTS EAG/ELK/ERG potassium channel family signature 291 302 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lal17g0245 878 PRINTS EAG/ELK/ERG potassium channel family signature 309 318 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lal17g0245 878 Pfam Ion transport protein 82 324 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lal17g0245 878 ProSiteProfiles cAMP/cGMP binding motif profile. 397 487 IPR000595 -
Lal17g0245 878 ProSiteProfiles KHA domain profile. 813 878 IPR021789 -
Lal17g0245 878 SMART cnmp_10 397 503 IPR000595 -
Lal17g0245 878 SUPERFAMILY cAMP-binding domain-like 322 507 IPR018490 -
Lal17g0245 878 ProSiteProfiles Ankyrin repeat profile. 661 693 IPR002110 GO:0005515
Lal17g0245 878 ProSiteProfiles Ankyrin repeat region circular profile. 564 595 - -
Lal17g0245 878 PANTHER INWARDLY RECTIFYING POTASSIUM CHANNEL SUBUNIT 22 877 - -
Lal17g0245 878 SUPERFAMILY Voltage-gated potassium channels 76 318 - -
Lal17g0245 878 SMART ANK_2a 597 626 IPR002110 GO:0005515
Lal17g0245 878 SMART ANK_2a 529 560 IPR002110 GO:0005515
Lal17g0245 878 SMART ANK_2a 661 690 IPR002110 GO:0005515
Lal17g0245 878 SMART ANK_2a 629 657 IPR002110 GO:0005515
Lal17g0245 878 SMART ANK_2a 564 593 IPR002110 GO:0005515
Lal17g0245 878 Gene3D - 83 320 - -
Lal17g0245 878 ProSiteProfiles Ankyrin repeat profile. 597 629 IPR002110 GO:0005515
Lal17g0245 878 PANTHER POTASSIUM CHANNEL AKT1 22 877 IPR045319 GO:0005249|GO:0006813
Lal17g0245 878 SUPERFAMILY Ankyrin repeat 538 719 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0245 Lal-Chr17 1522029 1527993 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0245 37 878 Ion Channels AT2G25600 58.121 0.0 1004
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0245 K21867 - gmx:100786870 1160.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0245 17 1522029 1527993 Lal17g0245 17 1522029 1527993 ECH
Lal10g0014 10 134256 144630 Lal17g0245 17 1522029 1527993 PCT
Lal17g0245 17 1522029 1527993 Lal10g0014 10 134256 144630 PCT