Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lal17g0234 | ATGGGAGAAACAAAGGACGAAGGATACGAAGAGGAGCTTCTCGACTACGAGGAAGAAGAAGATAAAGCCCCCGACTCTGTTGGAGCTAAAGTCAACGGTGAAGCTACTAAGAAAGGCTATGTTGGAATTCACAGTTCAGGATTCAGAGATTTTCTTCTAAAGCCAGAGCTTCTTCGTGCTATTGTGGACTCGGTGCAACACGAGTGCATACCTCAAGCAATTCTTGGAATGGATGTCATTTGTCAAGCTAAATCTGGAATGGGAAAAACTGCTGTCTTTGTTCTTTCATCATTGCAGCAGATTGATCCTGTTCCAGGCCAAGTTTCTGCACTTGTTCTGTGTCACACAAGAGAGTTAGCATACCAGATATGCCATGAGTTTGAGAGGTTTAGCACCTACCTGCCTGATCTAAAGGTTGCAGTCTTTTATGGTGGGGTCAACATTAAAGTTCACAAGGATCTGTTGAAAAATGAGTGCCCTCATGTTGTTGTTGGTACACCTGGAAGAATTCTAGCATTGGCTAGGGATAAAGACCTTTCTTTGAAGAATGTTAGGCATTTCATTTTAGACGAATGTGATAAGATGCTGGAATCACTCGACATGAGGAAAGATGTGCAAGACATTTTCAAGATGACTCCTCATGATAAGCAAGTTATGATGTTTTCTGCAACACTAAGCAAGGAAATTCGCCCAGTCTGCAAGAAATTTATGCAAGATCCAATGGAAATTTATGTTGATGACGAGGCCAAGTTGACCCTTCATGGGCTTGTGCAGCACTACATCAAATTGAAAGAGGAGGAGAAGAACAGGAAGTTGAATGATCTTCTTGATGCCCTAGACTTCAACCAAGTTGTCATCTTTGTAAAAAGTGTCAGTAGAGCAGCTGAGCTGGACAAACTACTCGTGGAGTGCAACTTCCCATCTATATGCATTCACTCTGGCATGTCCCAGGAAGAAAGGTTGAAGCGTTATAAAGGTTTTAAGGAGGGACATACAAGGATTCTTGTAGCAACTGATTTGGTTGGTAGGGGAATCGACATTGAACGTGTCAATATTGTCATAAACTATGACATGCCTGATTCTGCAGACACATATTTACACAGGGTTGGCCGAGCTGGAAGATTTGGCACCAAAGGCCTTGCAATTACATTTGTTTCATGTTCTACTGATGTTGATGTTCTCAACAATGTCCAGTCAAGGTTTGAGGTGGATATAAAGCAGCTTCCTGAGCAGATTGATACATCTACATACATGCCGTCGTAG | 1263 | 0.4228 | MGETKDEGYEEELLDYEEEEDKAPDSVGAKVNGEATKKGYVGIHSSGFRDFLLKPELLRAIVDSVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVPGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPHVVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSTDVDVLNNVQSRFEVDIKQLPEQIDTSTYMPS | 420 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lal17g0234 | 420 | CDD | DEADc_DDX39 | 45 | 245 | - | - | |
Lal17g0234 | 420 | Pfam | Helicase conserved C-terminal domain | 269 | 376 | IPR001650 | - | |
Lal17g0234 | 420 | Pfam | DEAD/DEAH box helicase | 64 | 229 | IPR011545 | GO:0003676|GO:0005524 | |
Lal17g0234 | 420 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 70 | 243 | IPR014001 | - | |
Lal17g0234 | 420 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
Lal17g0234 | 420 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 108 | 390 | IPR027417 | - | |
Lal17g0234 | 420 | Gene3D | - | 252 | 419 | IPR027417 | - | |
Lal17g0234 | 420 | PANTHER | DEAD-BOX ATP-DEPENDENT RNA HELICASE 56-LIKE | 27 | 415 | - | - | |
Lal17g0234 | 420 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 255 | 416 | IPR001650 | - | |
Lal17g0234 | 420 | CDD | SF2_C_DEAD | 256 | 385 | - | - | |
Lal17g0234 | 420 | SMART | helicmild6 | 295 | 376 | IPR001650 | - | |
Lal17g0234 | 420 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 27 | 415 | - | - | |
Lal17g0234 | 420 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Lal17g0234 | 420 | SMART | ultradead3 | 58 | 259 | IPR014001 | - | |
Lal17g0234 | 420 | Gene3D | - | 42 | 251 | IPR027417 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lal17g0234 | Lal-Chr17 | 1447458 | 1452513 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lal17g0234 | 1 | 420 | Eukaryotic Initiation Factors Gene Family | AT5G11200 | 81.450 | 0.0 | 735 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lal17g0234 | K12812 | - | gmx:100808957 | 806.594 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lal17g0234 | 17 | 1447458 | 1452513 | Lal17g0234 | 17 | 1447458 | 1452513 | ECH | |
Lal17g0234 | 17 | 1447458 | 1452513 | Lal21g0340 | 21 | 2275973 | 2281460 | LSH | |
Lal17g0234 | 17 | 1447458 | 1452513 | Lal4g0222 | 4 | 1393951 | 1403063 | LSH |