Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0234 ATGGGAGAAACAAAGGACGAAGGATACGAAGAGGAGCTTCTCGACTACGAGGAAGAAGAAGATAAAGCCCCCGACTCTGTTGGAGCTAAAGTCAACGGTGAAGCTACTAAGAAAGGCTATGTTGGAATTCACAGTTCAGGATTCAGAGATTTTCTTCTAAAGCCAGAGCTTCTTCGTGCTATTGTGGACTCGGTGCAACACGAGTGCATACCTCAAGCAATTCTTGGAATGGATGTCATTTGTCAAGCTAAATCTGGAATGGGAAAAACTGCTGTCTTTGTTCTTTCATCATTGCAGCAGATTGATCCTGTTCCAGGCCAAGTTTCTGCACTTGTTCTGTGTCACACAAGAGAGTTAGCATACCAGATATGCCATGAGTTTGAGAGGTTTAGCACCTACCTGCCTGATCTAAAGGTTGCAGTCTTTTATGGTGGGGTCAACATTAAAGTTCACAAGGATCTGTTGAAAAATGAGTGCCCTCATGTTGTTGTTGGTACACCTGGAAGAATTCTAGCATTGGCTAGGGATAAAGACCTTTCTTTGAAGAATGTTAGGCATTTCATTTTAGACGAATGTGATAAGATGCTGGAATCACTCGACATGAGGAAAGATGTGCAAGACATTTTCAAGATGACTCCTCATGATAAGCAAGTTATGATGTTTTCTGCAACACTAAGCAAGGAAATTCGCCCAGTCTGCAAGAAATTTATGCAAGATCCAATGGAAATTTATGTTGATGACGAGGCCAAGTTGACCCTTCATGGGCTTGTGCAGCACTACATCAAATTGAAAGAGGAGGAGAAGAACAGGAAGTTGAATGATCTTCTTGATGCCCTAGACTTCAACCAAGTTGTCATCTTTGTAAAAAGTGTCAGTAGAGCAGCTGAGCTGGACAAACTACTCGTGGAGTGCAACTTCCCATCTATATGCATTCACTCTGGCATGTCCCAGGAAGAAAGGTTGAAGCGTTATAAAGGTTTTAAGGAGGGACATACAAGGATTCTTGTAGCAACTGATTTGGTTGGTAGGGGAATCGACATTGAACGTGTCAATATTGTCATAAACTATGACATGCCTGATTCTGCAGACACATATTTACACAGGGTTGGCCGAGCTGGAAGATTTGGCACCAAAGGCCTTGCAATTACATTTGTTTCATGTTCTACTGATGTTGATGTTCTCAACAATGTCCAGTCAAGGTTTGAGGTGGATATAAAGCAGCTTCCTGAGCAGATTGATACATCTACATACATGCCGTCGTAG 1263 0.4228 MGETKDEGYEEELLDYEEEEDKAPDSVGAKVNGEATKKGYVGIHSSGFRDFLLKPELLRAIVDSVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVPGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPHVVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSTDVDVLNNVQSRFEVDIKQLPEQIDTSTYMPS 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0234 420 CDD DEADc_DDX39 45 245 - -
Lal17g0234 420 Pfam Helicase conserved C-terminal domain 269 376 IPR001650 -
Lal17g0234 420 Pfam DEAD/DEAH box helicase 64 229 IPR011545 GO:0003676|GO:0005524
Lal17g0234 420 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 70 243 IPR014001 -
Lal17g0234 420 MobiDBLite consensus disorder prediction 1 28 - -
Lal17g0234 420 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 108 390 IPR027417 -
Lal17g0234 420 Gene3D - 252 419 IPR027417 -
Lal17g0234 420 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 56-LIKE 27 415 - -
Lal17g0234 420 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 255 416 IPR001650 -
Lal17g0234 420 CDD SF2_C_DEAD 256 385 - -
Lal17g0234 420 SMART helicmild6 295 376 IPR001650 -
Lal17g0234 420 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 27 415 - -
Lal17g0234 420 MobiDBLite consensus disorder prediction 1 22 - -
Lal17g0234 420 SMART ultradead3 58 259 IPR014001 -
Lal17g0234 420 Gene3D - 42 251 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0234 Lal-Chr17 1447458 1452513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0234 1 420 Eukaryotic Initiation Factors Gene Family AT5G11200 81.450 0.0 735
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0234 K12812 - gmx:100808957 806.594
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0234 17 1447458 1452513 Lal17g0234 17 1447458 1452513 ECH
Lal17g0234 17 1447458 1452513 Lal21g0340 21 2275973 2281460 LSH
Lal17g0234 17 1447458 1452513 Lal4g0222 4 1393951 1403063 LSH