Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0232 ATGCCTCAATTGCTGCATGGGACGCTTAAGGTAACTATATTTGAAGTTGATAGGCTACAAAGTGGATGTAATTTGGATTTCTGCACGAAGGGCACAACGAAGAAGGGAAAGAGATTTCTAGCCCAAGTCAAGGGTTGTCTTTTATGCAGGCCTGAGATTGTTGGGACAAGACTCTATGCAACAGTTGATTTAGACAAAGCAAGGGTTGGAAGGACTAGAATGATAGGAAATGAACCCAACAATCCTAATTGGGATGAGACATTTGAAATATATTGTGCTCATCAAGTTTCCAACATTGTATTCACTATTAAAGATGATAATCCAATAGGAGCAACTCTAATTGGAAGAGCTTATGTCCCTGCTGAACTAGTTCTGAAGGGTCCTATAGTTGAAAGATGGTTTGAGATATTAGATGAAGAAGACCATCGTCCTATACCAGGTGGTTCTAAAATTCGTGTCACCTTGCAATTCTTAAGTGTTACCAAATGGTTTGAGGGAATAAGGATGCAATTTGATGGAGTTCCTAGAACATTTTTTAATCAAAGACAAGGTTGTAGTGTTACATTGTACCAAGATGTTCATGTTGCTCATGACAGTTATCTCCCTTTGATTTCACTATCTGGTGCAAAATATTATGAGCATAGAAGATGTTGGGAGGACATTTTCAATGCCATTATGGAAGCAAAACATTTTATTTACATAACTGGTTGGTCTGTTTACACTGAAATAACCTTAGTTCGAGACCCGGGAAAGGAAACAATCACCCTTGGGGATCTTCTTAAGATGAAGGCTAATGAAGGTGTAAGTGTTCTTTTGCTTGTTTGGGATGATAGGACTTCTGTCCCAGACTTTAAGAAAGATGGCTTGATGGCAACACATGATCAAGAAACTGAAGCTTACTTCAGAAACACGAATGTGCATTGTGTTTTGTGCCCGCGAAATCCGGATAACGGAAGAAGCATAGTTCAAGGTTTTCAGACTTCAACAATGTTCACTCATCACCAAAAGAGTATAGTTGTTGATAGCCATGTTGCTGTTGAAGGGTCTCAGAAGAGAGGGGTGGTGAGTTTCATAGGTGGAATTGATTTATGTGATGGAAGATATGATACTCTGGAGCATCCTATTTTCTCAACTTTAAGTACTATCCATCATGATGATTTCCATCAGCCAAATTTCCCTGGTGCTTCTATCAAGAAAGGTGGTCCAAGAGAGCCATGGCATGACATTCACTGCAAGCTAGAAGGACCAATTGCATGGGATGTATTGTACAATTTTGAGCAAAGGTGGGAGAAGCAAGTTGGTAAGAAATTCTTATTCTCAATTGAAAACCATGATACAATTATGGTCCACCCCTTTGATGTAATGAAATCAGAAGAAGATATGGAAACATGGAGTGTTCAGTTGTTTAGGTCCATAGATGGTGGTGCTGCAAATGGCTTCCCCCGCGCCCCGAATGATGTTGCTGAATTAGGCCTTGTTAGTGGGAAAGATAACATCATTGATAGAAGTATTCAAGATGCTTATATAAATGCTATTAGGACAGCAAATAGGTTTATCTACATTGAGAATCAATATTTTCTAGGGAGTTCATATGGTTGGAAATCATCTGATATAAAAGTTGAGGACATTGGTGCTTTGCATCTTATACCAAAAGAGGTGTCATTGAAGATAGTTAGTAAGATTGAAGCAGGACAAAGATTTGCAGTGTACATTGTGATTCCAATGTGGCCAGAAGGTGTACCTGAAAGTGCTTCAGTTCAAGCAATATTAGATTGGCAAAGGAGGACCATGGAGATGATGTATTCTGACATTGCTGAGGCCATACATAATAAGGGAATTGAAGCACATCCTAGAGATTATTTGACATTTTTTTGTCTTGGTAAGAAAGAGCCTAGGATAGAAGGAGAATATACTCCTCCAGAGGAACCAGAGCCAGAAAGTGACTATAGGAGAGCACAAAATGCTAGGAGGTTCATGATCTATGTTCATTCCAAGATGATGATAGTGGATGATGAATACATAATTATTGGTTCTGCCAACATAAACCAAAGATCAATGGATGGTGGAAGGGACACAGAGATTGCAATGGGTGCATTCCAACCACATCATCTAACATCACATGGCCCACAAAGAGCAAAAGGTGAAATATATGGGTTCAGGAGAGCATTATGGTATGAGCATATAGGGGATCCTGATGATGAGATATTCAAAGACCCAGAAACTAAAGAATGTGTGAGTTTTGTGAATAGTCTTGCTAAGAGGAATTGGGAGTTATACACAAAGGATTCATTTGATGAAAATGCACAAATTCACCACCTTTTAAGATACCCTATAGAAGTGGCTAATGATGGAACTATAACAACACTGCCAGGGTTTGAATTTTTTCCTGACACAAAGGCTCCTATTCTTGGCACAAAATCTGATTACCTTCCTCCAATACTTACCACATAG 2451 0.3909 MPQLLHGTLKVTIFEVDRLQSGCNLDFCTKGTTKKGKRFLAQVKGCLLCRPEIVGTRLYATVDLDKARVGRTRMIGNEPNNPNWDETFEIYCAHQVSNIVFTIKDDNPIGATLIGRAYVPAELVLKGPIVERWFEILDEEDHRPIPGGSKIRVTLQFLSVTKWFEGIRMQFDGVPRTFFNQRQGCSVTLYQDVHVAHDSYLPLISLSGAKYYEHRRCWEDIFNAIMEAKHFIYITGWSVYTEITLVRDPGKETITLGDLLKMKANEGVSVLLLVWDDRTSVPDFKKDGLMATHDQETEAYFRNTNVHCVLCPRNPDNGRSIVQGFQTSTMFTHHQKSIVVDSHVAVEGSQKRGVVSFIGGIDLCDGRYDTLEHPIFSTLSTIHHDDFHQPNFPGASIKKGGPREPWHDIHCKLEGPIAWDVLYNFEQRWEKQVGKKFLFSIENHDTIMVHPFDVMKSEEDMETWSVQLFRSIDGGAANGFPRAPNDVAELGLVSGKDNIIDRSIQDAYINAIRTANRFIYIENQYFLGSSYGWKSSDIKVEDIGALHLIPKEVSLKIVSKIEAGQRFAVYIVIPMWPEGVPESASVQAILDWQRRTMEMMYSDIAEAIHNKGIEAHPRDYLTFFCLGKKEPRIEGEYTPPEEPEPESDYRRAQNARRFMIYVHSKMMIVDDEYIIIGSANINQRSMDGGRDTEIAMGAFQPHHLTSHGPQRAKGEIYGFRRALWYEHIGDPDDEIFKDPETKECVSFVNSLAKRNWELYTKDSFDENAQIHHLLRYPIEVANDGTITTLPGFEFFPDTKAPILGTKSDYLPPILTT 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0232 816 Gene3D Endonuclease Chain A 205 450 - -
Lal17g0232 816 SMART pld_4 329 367 IPR001736 GO:0003824
Lal17g0232 816 SMART pld_4 658 685 IPR001736 GO:0003824
Lal17g0232 816 SMART C2_3c 8 133 IPR000008 -
Lal17g0232 816 SUPERFAMILY Phospholipase D/nuclease 168 439 - -
Lal17g0232 816 ProSiteProfiles C2 domain profile. 1 134 IPR000008 -
Lal17g0232 816 Gene3D Endonuclease Chain A 490 702 - -
Lal17g0232 816 SUPERFAMILY Phospholipase D/nuclease 492 736 - -
Lal17g0232 816 Pfam C2 domain 8 136 IPR000008 -
Lal17g0232 816 Gene3D C2 domain 5 168 IPR035892 -
Lal17g0232 816 PIRSF PLD_plant 1 816 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Lal17g0232 816 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 3 159 IPR035892 -
Lal17g0232 816 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 658 685 IPR001736 GO:0003824
Lal17g0232 816 CDD C2_plant_PLD 1 158 - -
Lal17g0232 816 Pfam Phospholipase D Active site motif 329 367 IPR001736 GO:0003824
Lal17g0232 816 Pfam Phospholipase D Active site motif 659 685 IPR001736 GO:0003824
Lal17g0232 816 PANTHER PHOSPHOLIPASE D ALPHA 3 3 816 - -
Lal17g0232 816 Pfam Phospholipase D C terminal 733 806 IPR024632 -
Lal17g0232 816 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 329 367 IPR001736 GO:0003824
Lal17g0232 816 PANTHER PHOSPHOLIPASE D 3 816 IPR015679 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0232 Lal-Chr17 1441637 1445151 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0232 3 816 Phospholipase D Gene Family (Wang group) AT3G15730 63.932 0.0 1064
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0232 K01115 - gmx:100794115 1234.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0232 17 1441637 1445151 Lal17g0232 17 1441637 1445151 ECH
Lal17g1246 17 13482662 13486936 Lal17g0232 17 1441637 1445151 ECH
Lal17g0232 17 1441637 1445151 Lal4g0220 4 1381520 1385964 LSH