Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0215 ATGAAACAAAAAAGCTATAAAAAAGAGGGCGAGTTGGGAACTAGGGTTTCTTCACAAATTAGGCCGTCGCACAAGACATTCAAAATCAAGAAGAAGCTGGCGAAGAAGATTAGGCAGAATAGGCCAATCCCCTATTGGATCCGCATGAGGACCGACAACACCATCAGGTACAATGCTAAGCGTCGCCACTGGCGTCGTACTAAGCTCGGATTCTGA 216 0.463 MKQKSYKKEGELGTRVSSQIRPSHKTFKIKKKLAKKIRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 71
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0215 71 MobiDBLite consensus disorder prediction 1 24 - -
Lal17g0215 71 Pfam Ribosomal L39 protein 29 69 IPR000077 GO:0003735|GO:0005840|GO:0006412
Lal17g0215 71 Gene3D Ribosomal protein L39e 22 71 IPR023626 -
Lal17g0215 71 SUPERFAMILY Ribosomal protein L39e 23 70 IPR023626 -
Lal17g0215 71 ProSitePatterns Ribosomal protein L39e signature. 50 66 IPR020083 GO:0003735|GO:0005840|GO:0006412
Lal17g0215 71 PANTHER - 12 71 - -
Lal17g0215 71 PANTHER RIBOSOMAL PROTEIN L39E 12 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0215 Lal-Chr17 1324941 1325720 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0215 22 71 Cytoplasmic Ribosomal Protein Gene Family AT4G31985 88.000 1.44e-28 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0215 K02924 - gmx:100801450 95.9005