Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0214 ATGGCCAGACCACAACAGCGTTACCGAGGCGTTCGACAAAGGCACTGGGGCTCTTGGGTATCCGAAATTCGACATCCTATATTGAAAACTAGGATATGGCTTGGTACTTTTGAAACTGCTGAGGATGCAGCTAGAGCATATGATGAAGCAGCAAGGCTAATGTGCGGTACAAGGGCAAGAACAAACTTCCCTTACAACCCAAATGCACCACAATCAACATCTTCTAAGGTACTATCAGCAACTTTAACTGCTAAACTTCACAGGTGCTATATGGCTTCGCTTCAAATGACCATGCCAGAGCCTCGAAGTGTTATGGCTTCAACAAATAATGCCATTTCCACAAGCAACTTATTACCTATGAAAGGGAGTGAAACTGATGCAATGTTGTTGCCACTAAAGAGAGAACAAGAGGAGCAAGAAACAGAAGGGAATTGGGTTTTGAAGAAGGTTAAAGTTGAAAGTTCTCAGCAGTTCAAGCCTCTTGAAGAAGATCATATAGAGCAAATGATAGAAGAGTTGCTTCATTATGGCTCTATTGAACTCTGCTCTGTTTTCCCATCTCAGGCTGTTTGA 573 0.4276 MARPQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAARLMCGTRARTNFPYNPNAPQSTSSKVLSATLTAKLHRCYMASLQMTMPEPRSVMASTNNAISTSNLLPMKGSETDAMLLPLKREQEEQETEGNWVLKKVKVESSQQFKPLEEDHIEQMIEELLHYGSIELCSVFPSQAV 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0214 190 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Lal17g0214 190 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Lal17g0214 190 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Lal17g0214 190 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003-LIKE 1 184 - -
Lal17g0214 190 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Lal17g0214 190 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Lal17g0214 190 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Lal17g0214 190 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 184 - -
Lal17g0214 190 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Lal17g0214 190 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0214 Lal-Chr17 1319435 1320887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0214 1 190 AP2-EREBP Transcription Factor Family AT5G25190 62.626 3.39e-81 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal17g0214 AP2 6.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0214 - - gmx:100819158 304.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0214 17 1319435 1320887 Lal17g0214 17 1319435 1320887 ECH
Lal17g0214 17 1319435 1320887 Lal4g0203 4 1265749 1267280 LSH