Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0211 ATGAGTCAGGAGCCTTATCTCTATGATAACACTAGAGAGCTTCCTCCAAGTCCAATTACACCATTGCAGAATTCACATGAAAATAAACAGCATCAATCTGGTGAGGAACAAGAAGAAATAAAGGAGGGAGAGACAGATACCTTATTGGATCTGAATGTTCCTTGTGGTGATTCTTCTCTTGAATGCAGTCCACAGCTCAATCTCATTACCTGTTTGGATATGGATTCAGCTAACACTTCATCAGAAGAAAACCCTCCTGATCCTGATGAAGGTTTTGGTGCAGCAGCAGAGCCCAGAGTATTCTCTTGTAACTACTGCAACAGAAAGTTCTATAGTTCTCAAGCTCTTGGAGGACACCAAAATGCTCATAAAAGAGAGAGGTCAATAGCAAAGAGAGGTCAAAAATTAAGAACACATATGATGACCTCAGCAGCAGCTTTTGGAATACCTTTTCTTCAAGGTATGGCATCTCTACCCCTCCATGGTAATAGACCACTTGGAATTCAGGCTCACTCCATGGTTCATAACCCTTCTCATTATTTTTCATCTCATATCATTGGATATGGAAGCAATTATGGACAACATGGTTGGTCAAGATCAAGACCCCTTTTTTATCAAAAACCTGGAATAGGGAAGCTAGCAATGGAAACTTCACACAAAACAGCATTATCATCAAGAGGGAGCAGTGTTGGTAGATTTGAAGCTGTCAATGTAAGAAGTTCTATGCTCAATTCTGCATTCAATGAAGAAACAAGTGGATATGTTTTTAGTGGAACTCCTGTGAAGACTAATCAAGATGATATGAAGCTTCTTGATTTATCATTAAAGCTCTAA 834 0.3933 MSQEPYLYDNTRELPPSPITPLQNSHENKQHQSGEEQEEIKEGETDTLLDLNVPCGDSSLECSPQLNLITCLDMDSANTSSEENPPDPDEGFGAAAEPRVFSCNYCNRKFYSSQALGGHQNAHKRERSIAKRGQKLRTHMMTSAAAFGIPFLQGMASLPLHGNRPLGIQAHSMVHNPSHYFSSHIIGYGSNYGQHGWSRSRPLFYQKPGIGKLAMETSHKTALSSRGSSVGRFEAVNVRSSMLNSAFNEETSGYVFSGTPVKTNQDDMKLLDLSLKL 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0211 277 SUPERFAMILY beta-beta-alpha zinc fingers 98 129 IPR036236 -
Lal17g0211 277 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 11 277 - -
Lal17g0211 277 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 11 277 IPR044246 GO:0009788
Lal17g0211 277 ProSitePatterns Zinc finger C2H2 type domain signature. 103 123 IPR013087 -
Lal17g0211 277 MobiDBLite consensus disorder prediction 1 42 - -
Lal17g0211 277 Gene3D Classic Zinc Finger 93 148 - -
Lal17g0211 277 ProSiteProfiles Zinc finger C2H2 type domain profile. 101 128 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0211 Lal-Chr17 1296620 1297453 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0211 17 277 C2H2 Transcription Factor Family AT5G10970 39.927 5.11e-44 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal17g0211 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0211 - - lang:109327413 488.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0211 17 1296620 1297453 Lal21g0314 21 2106016 2106873 LSH
Lal17g0211 17 1296620 1297453 Lal4g0200 4 1251035 1251829 LSH
Lal10g0030 10 312041 312802 Lal17g0211 17 1296620 1297453 PCT
Lal17g0211 17 1296620 1297453 Lal10g0030 10 312041 312802 PCT