Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0210 ATGACAGTAGAGAATACAATGGTTGATCCCAGTGACCATTTTCCTAGAGGGATGCGTGTTCTTGCAGTGGATGATGACCCAACATGCCTCTTTGTTTTGGAAACTCTCCTCAAAAGATGTCAATATCACGTAACCACAACTAATGAAGCCATAACGGCATTGTCGTTGTTGAGAGAAAATAAAGACAAGTTTGACCTGGTAATCAGTGATGTGCACATGCCGGACATGGATGGATTTAAGCTGCTTGAGCTTGTTGGGCTTGAAATGGATCTACCTGTCATAATGTTGTCTGCAAACGGTGATAAGAAGATGGTGATGAAGGGGATTTCTCATGGAGCTTGCGATTATCTTCTGAAACCTGTGAGAATTGAGGAGCTAAAGAACATTTGGCAGCATGTAATCAGAAGGAAGAAGTTTGATCCAACGGAGATCAAAACAAACAGCCTAGACAAGACTACTTCTGATAGTGGCAATGGACTAGGGTCAACAGGAAGAGGAAACTCAGATCAAGGTGGAAAGGTGAGTAAAAAGAGAAAGGACCAAGATGATGAAGAAGATGAAGAGCAAGAGAATGATAATGAAGACCCATCAACACAGAAGAAGCCTCGGGTTGTTTGGTCTGTGGAGCTGCACCGACAGTTTGTTGCTGCTGTTAATCATTTAGGCGTTGAAAAGGCTGTACCTAAAAAAATTCTTGATATGATGAATGTTGAAAAGCTTACGAGGGAGAATGTGGCCAGCCATCTCCAAAAATACAGGCTTTATCTGAAAAGAATTAGTTGTGTGGCAAACCAACAGGCTAATATGGTGGCAGCCTTAGGGAGTGCAGATAATTCATATTTGAGAATGGGTTCGGTGAGCGGGGTTGGACATTTGCAAACATATAGTAGTTCTGGACAGTTTCATAATGCTTTTGGATCCTTTCCACCTAATGGGATGATTAGCAGATTGAACACTCCTTCTGGTCTGAATGTGCATGGATTTCCTTTTCCTGGAGTACGTCATTTGTGTCAAACACAAAACTTAATCGACTCCACAAACAATCAATTTAAGTTCCAGCCAGCTATAGTTCCTGTTAACCAGAATGGTGTTCAGGGAATGCCAGTATCCGTAGGGCTTGACCATTTGCAACAGAATACAGGTGTGACTTCTGTTCAAAACATGACCACTGCTAATGATGCTAGAGCAACTTTTCCCATAAATGATCTTCCAGATCGAGGACCAAGAGTAACTTCCAGTGACTCACACACTCCACGTCTGGGTATCTCCAACAGTGCCTTGATGTTGAAATCACATCCACAAGATACACTCGGTGGTATAGTTTATGAAAATTTATCTTCTTCAGCACGCTCTCAACATTCGGAAGTTTCTCTGTCTTTGCCAGATCAAGGTAGGTATCCCGATAATCGGTCAAGTTCTATGCAGCCATCTGGGGTTCCCGTAAAATCTCACCCACCAAGTGAATGCTTTAAACAAACATTTCTACATTCTATAGATAACATGGCATCTTTACCCTTACAAGGGAGGAATCTGGGAGGTTCTTCATCTTTCCCTTCACTGTACAGTCAAACTCATGATTCAATGAATGATATGCATTCCCAAGGATTGCTTTTTACTAGTAGACCTGGTCATATAAGCAGTAAAGTACCCTTCCAAGATTGGGAAGACCATAATCAGGATGCTATTTACCATTCGAATGTTGGCCACTGCTCAATGAACCCTTCAAGTGCTCCGGTTAATGTTGCCGTTGGTCCAGCAGGCCATAACAGAAAGTTGGACTTCAATTTTTGTGACCCGTTACAAATAAAGCGTCACAGGCTTGTGGAGTTAACCGCAGAAACCTCATTGAAACATACAGGTAATTTTGTGACCCAGCAGAAGTCTCAACAAAGTCGTTTGTCTAACAATCTTGGTTCACTGGAAGACTTTGTAAGTTCAATGATGAAATAG 1950 0.4195 MTVENTMVDPSDHFPRGMRVLAVDDDPTCLFVLETLLKRCQYHVTTTNEAITALSLLRENKDKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDKKMVMKGISHGACDYLLKPVRIEELKNIWQHVIRRKKFDPTEIKTNSLDKTTSDSGNGLGSTGRGNSDQGGKVSKKRKDQDDEEDEEQENDNEDPSTQKKPRVVWSVELHRQFVAAVNHLGVEKAVPKKILDMMNVEKLTRENVASHLQKYRLYLKRISCVANQQANMVAALGSADNSYLRMGSVSGVGHLQTYSSSGQFHNAFGSFPPNGMISRLNTPSGLNVHGFPFPGVRHLCQTQNLIDSTNNQFKFQPAIVPVNQNGVQGMPVSVGLDHLQQNTGVTSVQNMTTANDARATFPINDLPDRGPRVTSSDSHTPRLGISNSALMLKSHPQDTLGGIVYENLSSSARSQHSEVSLSLPDQGRYPDNRSSSMQPSGVPVKSHPPSECFKQTFLHSIDNMASLPLQGRNLGGSSSFPSLYSQTHDSMNDMHSQGLLFTSRPGHISSKVPFQDWEDHNQDAIYHSNVGHCSMNPSSAPVNVAVGPAGHNRKLDFNFCDPLQIKRHRLVELTAETSLKHTGNFVTQQKSQQSRLSNNLGSLEDFVSSMMK 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0210 649 MobiDBLite consensus disorder prediction 397 420 - -
Lal17g0210 649 SMART REC_2 18 130 IPR001789 GO:0000160
Lal17g0210 649 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 198 257 IPR017930 -
Lal17g0210 649 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 648 IPR045279 GO:0009736
Lal17g0210 649 Gene3D - 197 260 - -
Lal17g0210 649 Gene3D - 17 151 - -
Lal17g0210 649 CDD REC_typeB_ARR-like 20 134 - -
Lal17g0210 649 Pfam Response regulator receiver domain 20 128 IPR001789 GO:0000160
Lal17g0210 649 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Lal17g0210 649 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 201 254 IPR006447 GO:0003677
Lal17g0210 649 Pfam Myb-like DNA-binding domain 203 253 IPR001005 -
Lal17g0210 649 MobiDBLite consensus disorder prediction 452 480 - -
Lal17g0210 649 MobiDBLite consensus disorder prediction 452 485 - -
Lal17g0210 649 SUPERFAMILY Homeodomain-like 198 258 IPR009057 -
Lal17g0210 649 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR10 1 648 - -
Lal17g0210 649 SUPERFAMILY CheY-like 16 139 IPR011006 -
Lal17g0210 649 MobiDBLite consensus disorder prediction 146 170 - -
Lal17g0210 649 MobiDBLite consensus disorder prediction 145 203 - -
Lal17g0210 649 PIRSF RR_ARR_type-B 1 649 IPR017053 GO:0003677|GO:0003700|GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0210 Lal-Chr17 1286464 1290820 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0210 1 440 Response Regulator Gene Family AT2G25180 53.761 4.47e-135 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lal17g0210 Response_reg 8.9e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0210 - K14491 gmx:100809002 875.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0210 17 1286464 1290820 Lal21g0313 21 2090135 2094165 LSH
Lal8g1571 8 20031602 20035036 Lal17g0210 17 1286464 1290820 PCT
Lal17g0210 17 1286464 1290820 Lal8g1571 8 20031602 20035036 PCT