Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0208 ATGTACTTACATATCAATACAATTTCGGTGGCATGGCCTAAGATTTCATTACATCTTGCGTTCCCGCGAAATTCCCAAACTCACTTTCTCAGATCGCTAGAAAATCTCGCATTCCACGACATGAGTAGCTTGGTTGAAAGGCTTCGCGCAAGATCTGATCGCAAGCCAATTTATAATATAGATGACTCAGATGATGATGATCTCGTGCCTAGAAAACCTGGGGCAACTCAGGAGAAGTTTGAGAGGATAGTTCGAAGTGATGCAAAAGAGAAGTTGTGTCAAGCTTGTGGCGAAAATGGAAATCTTCTTAGCTGTGAAACATGCAATTATGTTTACCATCCTAGGTGTTTACTTCCTCCACTTAAGGGTCCTGTTCCAGACAGTTGGAGGTGCCCTGAGTGTGTTAGCCCACTTAATGATATCGAAAAGATTTTAGATTGTGAGATGCGCCCTACTGTAGCTGCTGATAATGATGCCACAGTATCGGGGTCAAAGCAAATTTTTGTCAAACAATACCTTGTTAAGTGGAAGGGACTATCATATTTGCATTGCAGTTGGGTGCTGGAGAAAGATTTTCAGAAAGCTTTCAAGACTCATCCTCGCTTAAAGACCAAACTGAACAACTTCCATCGTCAAATGGCGTCGGTCAATACTTCTGAGGATGATTTTCTTGCCATTCGACCTGAATGGACTACAGTCGATCGAGTACTTGCTTGCAGGGGTGACGATGATGAGAAGGAATATCTTGTGAAGTGGAAAGAGCTTCCGTATGATGAATGCTATTGGGAGTATGAGTCAGATATTTCTGCATTTCAGCCAGAAATAGAAAGATTTATTGCTTTACGCTCTAAATCCAGCAAACTTACTTCCTCTAATAAAAAAAGCAGTGACAAGTTTGATGCTGAATTGAAGAAACAGCAGAAAGAGTTTCAACAGTATGAACATAACCCTGATTTTCTTTCAGGCGGTACACTGCATCCATATCAGCTTGAAGGCTTGAACTTCTTGCGGTTCTCTTGGTCCAAGCAAACTCATGTTATACTTGCTGATGAAATGGGACTTGGGAAAACCATACAAAGTATTGCTTTCTTAGCAGCCCTTTTTGAAGAGGGCATTTCTCCACATCTGGTGGTTGCTCCACTTTCAACATTGAGAAACTGGGAACGTGAATTTGCAACATGGGCACCTCAAATGAATGTTATTATGTATGTTGGATCTGCCCAAGCTCGTGCTGTTATACGAGAGCATGAATTTTACTTTCCAAAAAAACAGAATATCAAGAGAAAGAAATCTGGTCAATTTTTTAGTGAAAGCAAGCAAGACAGGATTAAGTTTGATGTCCTTTTGACATCATATGAGATGATCAACTTGGACACAACATCATTGAAACCTATAAGTTGGGATTGCATGATAGTTGATGAAGGTCACCGTCTCAAAAACAAGGATTCAAAATTATTTTCTTCATTGAAGCAGTACTCTACCAGACATCGTGTGCTCTTGACTGGGACTCCTCTTCAGGTGGAAGGTACTTATGACAGATTGTTTAATGCATTTCAGAACAACCTGGATGAACTTTTCATGCTTATGCATTTCCTTGATGCCGGGAAGTTTGGAAGTTTAGAGGAGTTCCAGGAAGAGTTTAAGGATATCAATCAAGAGGAACAAATTTCAAGGCTTCATAAAATGTTGGCCCCACATCTTCTGCGAAGAGTGAAGAAAGATGTCATGAAAGAACTACCACCTAAAAAGGAACTTATTTTACGTGTTGAATTGAGCATCAAACAGAAAGAATATTATAAGGCAATTTTGACCCGCAATTATCAGATATTAACTCGCCGTGGCGGTGCTCAGATTTCTCTTATTAATGTTGTCATGGAACTGCGTAAGCTCTGTTGCCATCCTTACATGTTAGAAGGAGTTGAACCAGATATTGATGATGCGAAAGAGTCATTCAAACAGCTGCTAGAAGCATCAGGGAAGTTGCAATTGCTGGACAAGTTGATGGTGAAGCTTAAAGAGCAAGGACACAGAGTCCTTATATATTCTCAATTTCAGCACATGCTGGACTTACTTGAAGATTACTGTTCATACAAGACTTGGCAGTATGAAAGGATAGACGGTAAAGTTGCTGGGGCTGAAAGACAAATACGGATAGATCGTTTTAATGCCAAGAATTCATCAAGATTCTGCTTTCTTTTGTCTACCAGAGCTGGGGGTTTGGGGATAAATCTCGCAACTGCTGACACGGTCATTATATATGATAGTGATTGGAATCCTCATGCTGATTTACAAGCTATGGCTAGAGCTCATCGACTTGGGCAAACTAACAAGGTGCTGATCTATAGGCTTATAACACGGGGAACCATTGAAGAAAGGATGATGGAGTTGACAAAAAAGAAAATGGTGTTGGAGCACCTAGTTGTAGGGAGGCTAAAGGCTCAAAATATCAATCAGGAAGAGTTAGATGACATCATAAGGTATGGCTCAAAGGAGTTATTTGCGGATGAGAATGATGAAGCAGGCAAATCCCGCCAGATCCATTATGATGCCGCTGCTATCGATAGATTGTTGAATCGTGAGCAAGTTGGAAACGAAGAGGCTACTTTGGAAGATGAAGATGAAGATGGGTTTCTGAAGGCTTTCAAGGTTGCAAATTTTGAGTATGTTGATGAAGCCCAGGCTGCAGCAGAGGAGGCAGCACAAGAAAGAGTAATGAAGTCTATGGACAGTTCAGAAAGAACAAATTACTGGGAGGAGTTGTTAAAAGACAAGTATCAAGAGCATAAAGTTGAGGAGTTTAGTTCCTTGGGCAAAGGGAAGCGAAATCGCAAGATGATGGTTTCTGTTGAGGAGGATGACCTTGCTGGTCTGGAAGATGTTAGCTCTGATGGTGAAGATGACAATTATGAAGCCGAGCTTACTGATGGTGATTCAAATTCAACTGGAACTACTTCTGCTAGAAGGCCTTATAGAAAGAAAGCTCGTGATAGCACAGAGCCGCTCCCTCTGATGGAAGGTGAAGGAAGATCATTCAGGGTACTGGGCTTTAACCAAAATCAGAGGGCTGCATTTGTGCAAATATTAATGAGGTTTGGGGTTGGTGATTTTGATTGGAAGGAGTTTACCTCCCGCATGAAACAGAAGACTTACGAAGAAATCAAAGATTATGGGACCCTTTTCTTGTCTCATATTGCTGAAGATATAACTGATTCCTCTACATTTGCAGACGGTGTTCCCAAAGAAGGTCTCCGAATACAAGATGTTCTGGTTAGGATTGCAATTCTACTCTTGATAAAGGACAAGGTCAAGTTTGCATCAGAAAATCCTCGAATTGCACTGTTTTCAGATGACATATTATTTCGCTATCCTGGTTTGAAGGGTGCAAAAATATGGAAGGATGAGCATGATAGAGTTTTACTGGCCGCTGTGTTGAAGCACGGGTATGGAAGGTGGCAAGCTATTGTTGATGATAAGGACCTGAATATTCAGGAGCTCATCTGTAAGGAGTTGAATCTTCCCCTTGTAACTTTACCAGTGCTAGGACAAGTTGGCTCTCGTGCGCAAAATTTAGCAAATGTGGAGGGGCCTACCAACGAATCTAGGGAAAATGGTGAGACTGACATAGCAGCTGATGGTGCACAAGGTTCTGCTGATGCTAAGAACCAAGCACAGTTATATCAAGATTCCTCGGTGTTATATCATTTTAGAGACATGCAGAGAAGATTGGTTGAGTTTATAAAGAAGAGGGTTCTTCTCTTGGAAAAGGGGCTCAATGCTGAGTACCAGAAAGAGTACTTTGGTGATCTAGCAAATGAAGAACATAAAAGTGAACCCAAGGCTACAAGTTTTCCAAATTATAAATTAGGGGGACCTGACATCCAAATCATTGATCAACTGCCTCTAGTGGAAGCAATAGTTTTTGAAGAGATTTCGGTTGCTGCTTGTGATAAGGATCCAAATCAAATGGAACTTGTTCGACTTTATAATCAGATGTGCAAGGTAGTGAAGGAAAACCCCATGGATTTAGTTCGAACATCTTCGGAACGAGAACAAGCAGGGGGCAATATGGTGAAGAATATCCCTCCACTAGGAACGATTTGTGAGGATATTAACCGTCTTCTTACACCCGTGCAACAAGATCAGACTACTGTGGAAATGACAGTATTGAATTCAGACAACAAAGCAGAGGCTGCTATAGCAAAAGAGGACTTGAAACTTGATAATTCAGCAGAGATGGGAGATGATGCAGAAATAGGTGAAACTAAGAATGATGCTGAACTGAATGAGAACACAAATAAATCTGATGCTGGGGAATTGGATGATTAA 4326 0.4103 MYLHINTISVAWPKISLHLAFPRNSQTHFLRSLENLAFHDMSSLVERLRARSDRKPIYNIDDSDDDDLVPRKPGATQEKFERIVRSDAKEKLCQACGENGNLLSCETCNYVYHPRCLLPPLKGPVPDSWRCPECVSPLNDIEKILDCEMRPTVAADNDATVSGSKQIFVKQYLVKWKGLSYLHCSWVLEKDFQKAFKTHPRLKTKLNNFHRQMASVNTSEDDFLAIRPEWTTVDRVLACRGDDDEKEYLVKWKELPYDECYWEYESDISAFQPEIERFIALRSKSSKLTSSNKKSSDKFDAELKKQQKEFQQYEHNPDFLSGGTLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLAALFEEGISPHLVVAPLSTLRNWEREFATWAPQMNVIMYVGSAQARAVIREHEFYFPKKQNIKRKKSGQFFSESKQDRIKFDVLLTSYEMINLDTTSLKPISWDCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQVEGTYDRLFNAFQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHKMLAPHLLRRVKKDVMKELPPKKELILRVELSIKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIDDAKESFKQLLEASGKLQLLDKLMVKLKEQGHRVLIYSQFQHMLDLLEDYCSYKTWQYERIDGKVAGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVLIYRLITRGTIEERMMELTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKELFADENDEAGKSRQIHYDAAAIDRLLNREQVGNEEATLEDEDEDGFLKAFKVANFEYVDEAQAAAEEAAQERVMKSMDSSERTNYWEELLKDKYQEHKVEEFSSLGKGKRNRKMMVSVEEDDLAGLEDVSSDGEDDNYEAELTDGDSNSTGTTSARRPYRKKARDSTEPLPLMEGEGRSFRVLGFNQNQRAAFVQILMRFGVGDFDWKEFTSRMKQKTYEEIKDYGTLFLSHIAEDITDSSTFADGVPKEGLRIQDVLVRIAILLLIKDKVKFASENPRIALFSDDILFRYPGLKGAKIWKDEHDRVLLAAVLKHGYGRWQAIVDDKDLNIQELICKELNLPLVTLPVLGQVGSRAQNLANVEGPTNESRENGETDIAADGAQGSADAKNQAQLYQDSSVLYHFRDMQRRLVEFIKKRVLLLEKGLNAEYQKEYFGDLANEEHKSEPKATSFPNYKLGGPDIQIIDQLPLVEAIVFEEISVAACDKDPNQMELVRLYNQMCKVVKENPMDLVRTSSEREQAGGNMVKNIPPLGTICEDINRLLTPVQQDQTTVEMTVLNSDNKAEAAIAKEDLKLDNSAEMGDDAEIGETKNDAELNENTNKSDAGELDD 1441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0208 1441 MobiDBLite consensus disorder prediction 1403 1441 - -
Lal17g0208 1441 Gene3D - 1086 1210 - -
Lal17g0208 1441 ProSitePatterns Zinc finger PHD-type signature. 93 134 IPR019786 -
Lal17g0208 1441 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 663 824 IPR001650 -
Lal17g0208 1441 Pfam SNF2-related domain 345 637 IPR000330 GO:0005524|GO:0140658
Lal17g0208 1441 Pfam Helicase conserved C-terminal domain 660 773 IPR001650 -
Lal17g0208 1441 ProSiteProfiles Chromo and chromo shadow domain profile. 231 278 IPR000953 -
Lal17g0208 1441 Pfam CHD subfamily II, DUF1087 895 953 IPR009463 -
Lal17g0208 1441 Gene3D - 137 228 - -
Lal17g0208 1441 SMART ultradead3 321 546 IPR014001 -
Lal17g0208 1441 SMART DUF1086_2 961 1119 IPR009462 GO:0003677|GO:0006338
Lal17g0208 1441 MobiDBLite consensus disorder prediction 952 973 - -
Lal17g0208 1441 Pfam Chromo (CHRromatin Organisation MOdifier) domain 232 279 IPR023780 -
Lal17g0208 1441 Pfam Chromo (CHRromatin Organisation MOdifier) domain 141 196 IPR023780 -
Lal17g0208 1441 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 337 522 IPR014001 -
Lal17g0208 1441 SUPERFAMILY Chromo domain-like 105 216 IPR016197 -
Lal17g0208 1441 PANTHER CHD3-TYPE CHROMATIN-REMODELING FACTOR PICKLE 45 1105 - -
Lal17g0208 1441 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 572 828 IPR027417 -
Lal17g0208 1441 SMART chromo_7 229 283 IPR000953 -
Lal17g0208 1441 SMART chromo_7 138 201 IPR000953 -
Lal17g0208 1441 MobiDBLite consensus disorder prediction 952 1004 - -
Lal17g0208 1441 SMART DUF1087_2 891 956 IPR009463 -
Lal17g0208 1441 Pfam CHD subfamily II, SANT-like domain 984 1116 IPR009462 GO:0003677|GO:0006338
Lal17g0208 1441 Pfam PHD-finger 93 135 IPR019787 -
Lal17g0208 1441 Gene3D - 229 280 - -
Lal17g0208 1441 Gene3D - 317 579 IPR038718 -
Lal17g0208 1441 ProSiteProfiles Rubredoxin-like domain profile. 100 144 IPR024934 GO:0005506
Lal17g0208 1441 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 45 1105 - -
Lal17g0208 1441 SMART helicmild6 689 773 IPR001650 -
Lal17g0208 1441 SUPERFAMILY Chromo domain-like 225 280 IPR016197 -
Lal17g0208 1441 ProSiteProfiles Chromo and chromo shadow domain profile. 139 221 IPR000953 -
Lal17g0208 1441 CDD SF2_C_SNF 658 784 - -
Lal17g0208 1441 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 136 IPR013083 -
Lal17g0208 1441 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 300 570 IPR027417 -
Lal17g0208 1441 CDD CD1_tandem 137 211 - -
Lal17g0208 1441 Gene3D - 580 804 IPR027417 -
Lal17g0208 1441 CDD CD2_tandem 229 278 - -
Lal17g0208 1441 ProSiteProfiles Zinc finger PHD-type profile. 90 137 IPR019787 -
Lal17g0208 1441 Coils Coil 296 316 - -
Lal17g0208 1441 SMART PHD_3 92 135 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0208 Lal-Chr17 1264026 1286029 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0208 347 834 RAD5 or RAD16-like Gene Family AT1G02670 23.592 1.48e-26 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lal17g0208 SNF2_N 5e-61 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0208 K11643 - gmx:100790230 2316.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0208 17 1264026 1286029 Lal21g0312 21 2070464 2089699 LSH
Lal25g1037 25 13728580 13746746 Lal17g0208 17 1264026 1286029 PCT
Lal10g0031 10 324426 351865 Lal17g0208 17 1264026 1286029 PCT
Lal17g0208 17 1264026 1286029 Lal25g1037 25 13728580 13746746 PCT
Lal17g0208 17 1264026 1286029 Lal10g0031 10 324426 351865 PCT