Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0207 ATGGCAAAGTGTCACCGTAACGACGTCGGATCTCTCGTTCTCGATCATCGACACTCTACCAAGAACTCTACCTCCGGTGGACACTTCCGCCTCTGGAATTCCTCTCTCCGCCGCATCATCTTCGACGCCATTAGCTGCGGTGGCACCTCTCGCTACAAATACGACGACGACGACGACAACGACATCTCTTCCATTGCCTCAACGGGATACAAGGAGAAACATGCGGAAAATGAGAAATCGGAGACGAAGCTATCGGATCTTCTGAACGTAGAGGAGAATGAAATGGAAGCATCGAGGATGAAGGAAGAGGAATTGAGGGAAGTGGTGAAGGAGTTGGAAGGAGAAGATTTGGTGAGGAAGAGAATGGGAGCGAAGAGAGTGAGGATAATTGCGAAGGAGGAAGGGTTTGAAGTTAGAAGAACGCTTGCAATGCTTGGAGTGATTCCTCTACTTGTTGGAATGCTTGATCATGATAAACAATGCGTTGACTCTCAGATCGCTTCTCTCTACGCGTTACTCAATCTCGGAATCGGAAATGATGCAAATAAAGCAGCCATTGTCAAAGTTGGCGCGGTTCACAAGATGCTCGCGCTGATTGATTCAACAGATTCATCAGTGTGTGAAGCTATTGTTGCAAATTTCCTTGGATTGAGTGCTTTGGATTCTAACAAACTAATAATTGGATCCTCGGGTGCAATACCAGTCCTAGTTAGAACCCTTCAAGATTTAGATAATAAAAGTAGCACCCAAGCTAAGCAAGATGCTCTCCGAGCTCTGTACAATCTTTCAATAACTCCAACCAACATTTCATTCATTTTGGAAACGGATTTGGTCTCATTTCTGGTAAACTCAACAGGAGACATGGAAGTAAGTGAGAGAATCCTCTCAATCCTAAGCAATTTGGTGTCAACTCCTGAAGGTAGAAAAGCTATCAGTGCTGTAAGGGATGCAATCCCAATTATGATGGATGTATTGAGTTGGACAGATTCACCACAATGCCAAGAGAAAGCATCATACATTTTAATGATTATGGCACACAAATCCTATGGTGACAGGCACACCATGATTGAGGCAGGGATTGCATCATCATTGCTTGAGTTGACACTTTTCGGCACCCAGTTGGCACAGAAAAGAGCCTCAAGGATATTGGAATGTTTGAGGCTAGATAAAGGGAAGCAGGTTTCTCGGCGCTACGGTGGAAACTTGGGTGCAACTGTCTCTGCACCTATTTGTGGCACTTCATCATCATTTACAAAGACAGAGGGTAGAAGCGTGGAGGACGAAGATATGATGAGCGAGGAGAAGAAAGCAGTGAAGCAATTAGTCCAGCAAAGTTTGCAGAACAACATGAATAAAATTGTGAAGAGGGCCAACTTGCGTCATGATTTCGTTCCACCAGATCGTTTTACTTCCTTCACTTCAAGTTCAACTTCAAAGAGCCTGGCACTTTGA 1452 0.4463 MAKCHRNDVGSLVLDHRHSTKNSTSGGHFRLWNSSLRRIIFDAISCGGTSRYKYDDDDDNDISSIASTGYKEKHAENEKSETKLSDLLNVEENEMEASRMKEEELREVVKELEGEDLVRKRMGAKRVRIIAKEEGFEVRRTLAMLGVIPLLVGMLDHDKQCVDSQIASLYALLNLGIGNDANKAAIVKVGAVHKMLALIDSTDSSVCEAIVANFLGLSALDSNKLIIGSSGAIPVLVRTLQDLDNKSSTQAKQDALRALYNLSITPTNISFILETDLVSFLVNSTGDMEVSERILSILSNLVSTPEGRKAISAVRDAIPIMMDVLSWTDSPQCQEKASYILMIMAHKSYGDRHTMIEAGIASSLLELTLFGTQLAQKRASRILECLRLDKGKQVSRRYGGNLGATVSAPICGTSSSFTKTEGRSVEDEDMMSEEKKAVKQLVQQSLQNNMNKIVKRANLRHDFVPPDRFTSFTSSSTSKSLAL 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0207 483 Gene3D - 76 458 IPR011989 -
Lal17g0207 483 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 482 - -
Lal17g0207 483 Coils Coil 88 115 - -
Lal17g0207 483 PANTHER ARMADILLO/BETA-CATENIN-LIKE REPEAT PROTEIN 1 482 - -
Lal17g0207 483 SUPERFAMILY ARM repeat 104 389 IPR016024 -
Lal17g0207 483 SMART arm_5 220 264 IPR000225 GO:0005515
Lal17g0207 483 SMART arm_5 265 303 IPR000225 GO:0005515
Lal17g0207 483 SMART arm_5 307 346 IPR000225 GO:0005515
Lal17g0207 483 SMART arm_5 135 177 IPR000225 GO:0005515
Lal17g0207 483 SMART arm_5 179 219 IPR000225 GO:0005515
Lal17g0207 483 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 146 190 IPR000225 GO:0005515
Lal17g0207 483 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 231 263 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0207 Lal-Chr17 1255871 1258907 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0207 120 384 U-box Gene Family AT3G46510 34.799 1.87e-27 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0207 - - gmx:100796229 587.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0207 17 1255871 1258907 Lal21g0310 21 2055533 2057770 LSH
Lal10g0032 10 355262 359727 Lal17g0207 17 1255871 1258907 PCT
Lal17g0207 17 1255871 1258907 Lal10g0032 10 355262 359727 PCT