Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0204 ATGGAAGAAATCAAGTGTCACAATTTGTTTGGCAAATATGAAATGGGTAGGCTTCTAGGGAAGGGGACTTTCGCTAAAGTATACTATGCGAAACAAATAGCCACGGGTGAAAGCGTCGCGGTCAAAGTTATCAACAAAGATCAAGTGAAAAAACAGGGTATGATGGAGCAGATCACAAGGGAGATTTCAGTTATGCGTTTGGTTAGACACCCAAACATCGTTGAACTGAAAGAAGTATTAGCGACGAAAAAGAAAATATACTTCGTGATGGAATATGTTCGTGGCGGAGAGCTTTTCGCAAAGGTGGCAAAAGGAAAACTGAAAGAAGATCAAGCCCGTAAATACTTTCAGCAATTAATCTCAGCCATTGATTTCTGTCACAGTAGAGGCGTTTCCCACCGTGACTTAAAGCCTGAAAACCTTCTCCTCGACCACAACGAGAACCTTAAAATCTCCGACTTCGGACTCTCCGCTCTGCCGGAACAGTTACGCTTAGACGGGCTCTTACACACGCAGTGTGGGACCCCTGCTTACGTGGCACCTGAGGTTTTACGAAAGAAAGGTTACGATGGATCTAAGGCTGATATATGGTCATGTGGAATCATATTATATGTTTTGCTTGCAGGGTTTCTTCCTTTTCAACATGAGAATCTTATGTCCATGTATAGCATGGTTTTAAAAGCACAGTTTCAGTTTCCTCCTTGGTTTTCATCTGATTCAAGAAAATTGATCTCTAATATTTTAGTTGCTGATCCTTCTAGACGAACCACCATTCCCGCTATTATGCGCGTCCCATGGTTCCACAAAGGATTCCAATTCCCAGTGACGAAGGTTGAAGAAGAACAACAACAAGTTAAAGAAGCAGAAGGTTCTATAAAGAGTCATAAGGTGTCGTCACCAAAGTTTTTTAACGCGTTTGAATTCATATCGTCCATGTCTTCGGGTTTCGATCTTTCTGGATTGTTTGAGAGCAAGAAGAAGAAAGGTTCAGTGTTCACATCAAAGTGTTCAGCGGCGGCGATCGTGGACAAGATTGAAAAGGCGGCGGAGGGGTTGAGTTTTAAGGTGACGGGTGTGAAGGATTTCGCGATCAGGATGCAGGGACCGCCGGAAGGGAGGAAAGGGAGGCTTTCCGTGACGGCGGAGGTGTTTGAGGTGGCGCCGGAGGTGGCTGTGGTGGAGTTTTCAAAATCCGCCGGAGACACATTGGAGTATGCGAAGTTTTATGAGGAAGATATGAGGCCAGCGTTGAAAGATATTGTTTGGACGTGGCAAGGTGATGCCACGTGTAACCCTGATATCACGGTGTCTCCTCAAGCTGAAGATTGTCAAAACCAGGTTGAATAA 1347 0.4462 MEEIKCHNLFGKYEMGRLLGKGTFAKVYYAKQIATGESVAVKVINKDQVKKQGMMEQITREISVMRLVRHPNIVELKEVLATKKKIYFVMEYVRGGELFAKVAKGKLKEDQARKYFQQLISAIDFCHSRGVSHRDLKPENLLLDHNENLKISDFGLSALPEQLRLDGLLHTQCGTPAYVAPEVLRKKGYDGSKADIWSCGIILYVLLAGFLPFQHENLMSMYSMVLKAQFQFPPWFSSDSRKLISNILVADPSRRTTIPAIMRVPWFHKGFQFPVTKVEEEQQQVKEAEGSIKSHKVSSPKFFNAFEFISSMSSGFDLSGLFESKKKKGSVFTSKCSAAAIVDKIEKAAEGLSFKVTGVKDFAIRMQGPPEGRKGRLSVTAEVFEVAPEVAVVEFSKSAGDTLEYAKFYEEDMRPALKDIVWTWQGDATCNPDITVSPQAEDCQNQVE 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0204 448 CDD STKc_SnRK3 12 266 - -
Lal17g0204 448 SUPERFAMILY Protein kinase-like (PK-like) 10 285 IPR011009 -
Lal17g0204 448 ProSiteProfiles NAF domain profile. 298 323 IPR018451 GO:0007165
Lal17g0204 448 ProSitePatterns Serine/Threonine protein kinases active-site signature. 131 143 IPR008271 GO:0004672|GO:0006468
Lal17g0204 448 ProSiteProfiles Protein kinase domain profile. 13 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal17g0204 448 Coils Coil 278 298 - -
Lal17g0204 448 CDD CIPK_C 304 418 - -
Lal17g0204 448 SMART serkin_6 13 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal17g0204 448 Pfam NAF domain 300 357 IPR004041 GO:0007165
Lal17g0204 448 PANTHER - 1 435 - -
Lal17g0204 448 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 25-RELATED 1 435 - -
Lal17g0204 448 Gene3D Kinase associated domain 1, KA1 298 423 - -
Lal17g0204 448 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524
Lal17g0204 448 Pfam Protein kinase domain 13 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal17g0204 448 Gene3D Phosphorylase Kinase; domain 1 4 92 - -
Lal17g0204 448 Gene3D Transferase(Phosphotransferase) domain 1 93 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0204 Lal-Chr17 1232887 1234233 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0204 2 431 CBL-interacting serine-threonine protein kinases AT5G25110 68.493 0.0 629
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Lal17g0204 Pkinase 2.4e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0204 - - gmx:100817520 682.945