Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0188 ATGGCTTCTAAGCTATGCGATTCTTGCAAATCCACCACCGCCACCCTCTATTGCCGCCCTGACTCCGCCTTCCTCTGCACCGCATGCGACTCCAATGTCCACGCCGCCAACAAGCTCGCCTCCCGTCATCCACGTGTCACTCTCTGTGATGTTTGCGAACAAGCTCCTGCTCACGTCACATGCAAGGCTGATGCTGCTTCTCTCTGCTTCGCTTGCGACCGCGACATCCACACTGCTAATCCACTCGCCGCTCGCCATGAGCGCGTACCTGTCACGCCCTTCTATGACCAATCCCTTCACTCCGTTAAATCTCACTTCGATGACTTCCCCGACGACGATCACCGTTTCTTCGCTAATGATGCTGATGCTGACGTCAGCACCGATGAGGCTGAGGCCGCTTCGTGGTTGCTTCCTAACCCGAAAGCCGCAGATCTGAACGCTTTTGCCGAAATTGAACCGATTCCTTATGTAGATCTGGATTACGATCTGAAACCGCAGCAGCAGAAAAGTTCCAGTGCCACCGATGGTGTTGTTCCAGTACAGAACAACGAGCCTTTCAGCTACTCTTACAAGTTCCACAGCTCGCAGTCACAGTCTCCGATGAGTCATAGTGTATCGTCATCGTCGATAGAGGTAGGGGTGGTGCCGGATGAGAATCCGATGACGGAGATATACAGCAAGGTGGCGATGGCGGAGGGAGGGAATCACGGTGTGGGAGTGGCGGCGGATAGAGTAGCTAGGGTTATGAGGTACAGGGAGAAGAGGAAGAATAGAAAGTTCGAGAAGACTATTCGCTATGCTTCAAGGAAAGCATATGCAGAAACTAGGCCAAGGATCAAAGGAAGGTTTGCTAAACGTTCCGATGCTGATTCTCACCCAGTTGACGGATACGGCGTCGTTCCAACCTGTTAA 912 0.5274 MASKLCDSCKSTTATLYCRPDSAFLCTACDSNVHAANKLASRHPRVTLCDVCEQAPAHVTCKADAASLCFACDRDIHTANPLAARHERVPVTPFYDQSLHSVKSHFDDFPDDDHRFFANDADADVSTDEAEAASWLLPNPKAADLNAFAEIEPIPYVDLDYDLKPQQQKSSSATDGVVPVQNNEPFSYSYKFHSSQSQSPMSHSVSSSSIEVGVVPDENPMTEIYSKVAMAEGGNHGVGVAADRVARVMRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRSDADSHPVDGYGVVPTC 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0188 303 MobiDBLite consensus disorder prediction 284 303 - -
Lal17g0188 303 ProSiteProfiles CCT domain profile. 244 286 IPR010402 GO:0005515
Lal17g0188 303 SMART bboxneu5 49 91 IPR000315 GO:0008270
Lal17g0188 303 SMART bboxneu5 1 48 IPR000315 GO:0008270
Lal17g0188 303 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
Lal17g0188 303 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 2 301 IPR045281 GO:0009909
Lal17g0188 303 CDD Bbox1_BBX-like 5 48 - -
Lal17g0188 303 Pfam CCT motif 244 286 IPR010402 GO:0005515
Lal17g0188 303 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270
Lal17g0188 303 Pfam B-box zinc finger 46 91 IPR000315 GO:0008270
Lal17g0188 303 Pfam B-box zinc finger 4 47 IPR000315 GO:0008270
Lal17g0188 303 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 2 301 - -
Lal17g0188 303 CDD Bbox1_BBX-like 48 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0188 Lal-Chr17 1157658 1162659 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0188 1 302 C2C2-CO-like Transcription Factor Family AT5G24930 49.727 6.48e-95 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Lal17g0188 zf-B_box 4.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0188 - - gmx:100794431 406.371
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0188 17 1157658 1162659 Lal17g0188 17 1157658 1162659 ECH
Lal17g0188 17 1157658 1162659 Lal21g0293 21 1956434 1957904 LSH