Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0183 ATGGATGGTGCCAATAATCGCCGTTTTATGCTTCCTATAGGATACAGGTTTTGTCCAAATGACGAGGATTTGGTGAATTGTTACCTCACAAAAAAGGCATTTGGTGAACCAGTTTATCCTAATATTATTCCAGATGTCGATGTCTTTCAGAATCATCCCTCAACACTCCCAGAAGGTGGAAGGCTTTTCCTAGAGAAGAGGTTTTTCTTCTGTGTGACTAGAAGACCCGTGTTAGTAAACATGCATGAGCAAATAGCTGCTGGTCCTGGATATTGGAGAACTAAAGGGAAAACCAAGGAGATTGCTATTTCAGGGAACAATCAACTCATTGGGATAAAAAACATGTTTGTTTTTTGGGAAGGAAGAGACGCCATTCAAACAAAAACAAACTGGGTCATGCATGAGTTTCGTCTTACACACCGTACAACTCCAAACCAACTTCAGGTGGCAGATTGGGCTGTGTATCGCGTATTTCAGGAGAAAAACAAAAGGGCAGAAGGGTCAGATGAGGAGTCCTCTGGAAGGAATAATGCTGACACACCCTAG 546 0.4231 MDGANNRRFMLPIGYRFCPNDEDLVNCYLTKKAFGEPVYPNIIPDVDVFQNHPSTLPEGGRLFLEKRFFFCVTRRPVLVNMHEQIAAGPGYWRTKGKTKEIAISGNNQLIGIKNMFVFWEGRDAIQTKTNWVMHEFRLTHRTTPNQLQVADWAVYRVFQEKNKRAEGSDEESSGRNNADTP 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0183 181 Gene3D NAC domain 20 165 IPR036093 GO:0003677|GO:0006355
Lal17g0183 181 ProSiteProfiles NAC domain profile. 11 160 IPR003441 GO:0003677|GO:0006355
Lal17g0183 181 Pfam No apical meristem (NAM) protein 12 138 IPR003441 GO:0003677|GO:0006355
Lal17g0183 181 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 11 165 - -
Lal17g0183 181 SUPERFAMILY NAC domain 8 160 IPR036093 GO:0003677|GO:0006355
Lal17g0183 181 MobiDBLite consensus disorder prediction 162 181 - -
Lal17g0183 181 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 11 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0183 Lal-Chr17 1116587 1117404 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0183 11 160 NAC Transcription Factor Family AT2G24430 36.667 4.56e-29 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lal17g0183 NAM 1.3e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0183 - - lang:109328421 342.043