Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0181 ATGGCTAGCACTGTTGCTTCTGATTCTACTATTATTCATTCTTCTTCTGCTAATAATGATAATAATAACAAGTTATACAAAGGCGTGAGGTTGAGAAAATGGGGGAAATGGGTTTCTGAAGTGAGGTTACCTAATAGCCGTGAAAGGATTTGGCTTGGATCTTATGATTCTCCTCTAAAAGCTGCTCGAGCTTTCGATGCTGCCCTTTATTGTCTACGTGGTCGAAATGCTAATTTCAATTTTCCTGACACCCCTTTCAACTTGGAGAAGAATAATAATGTGGTTTTCTCAGCTGGTGATAAATCTCTTACCTCTCAAGAGATTCAAGAGATTGCTTCTAAGTTCGCCAATGAGGACCCACCACCACCACCACCACTACAGCGTGGTGGTGATATGAGTATTAGTACTTCTACTATTGCTGCTACTACTACTACTACTACTACCATTGCTGCTACCACTAGTGTCACCTCGTCTTGTTCTACTAATATATGTGACTATGATGGGATGCAAGTGGAGCATGGTGGGGACATGAGTAAAATGGATTGGACATTTTTGGATATGTTGGATCATGAGTACTCAAATGAGGTTCCTGTTTGTTCCGATTATTATGGCCTATATTCTAACCTAGACAATGTGCATTCGGGTGAATTTGTACTACCATCCCATTTTGAGGATAATGAGCAACAGATTGAAGGTGATGGTAATCTTTTTTCTCACCAATCATTCCTTTGGAACTGGTGA 741 0.4022 MASTVASDSTIIHSSSANNDNNNKLYKGVRLRKWGKWVSEVRLPNSRERIWLGSYDSPLKAARAFDAALYCLRGRNANFNFPDTPFNLEKNNNVVFSAGDKSLTSQEIQEIASKFANEDPPPPPPLQRGGDMSISTSTIAATTTTTTTIAATTSVTSSCSTNICDYDGMQVEHGGDMSKMDWTFLDMLDHEYSNEVPVCSDYYGLYSNLDNVHSGEFVLPSHFEDNEQQIEGDGNLFSHQSFLWNW 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0181 246 Gene3D AP2/ERF domain 25 83 IPR036955 GO:0003700|GO:0006355
Lal17g0181 246 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 12 246 - -
Lal17g0181 246 SMART rav1_2 25 88 IPR001471 GO:0003700|GO:0006355
Lal17g0181 246 Pfam AP2 domain 26 74 IPR001471 GO:0003700|GO:0006355
Lal17g0181 246 ProSiteProfiles AP2/ERF domain profile. 25 82 IPR001471 GO:0003700|GO:0006355
Lal17g0181 246 SUPERFAMILY DNA-binding domain 25 83 IPR016177 GO:0003677
Lal17g0181 246 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF018 12 246 - -
Lal17g0181 246 CDD AP2 24 84 IPR001471 GO:0003700|GO:0006355
Lal17g0181 246 PRINTS Ethylene responsive element binding protein signature 26 37 IPR001471 GO:0003700|GO:0006355
Lal17g0181 246 PRINTS Ethylene responsive element binding protein signature 48 64 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0181 Lal-Chr17 1100804 1101544 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0181 26 117 AP2-EREBP Transcription Factor Family AT1G19210 69.565 5.15e-39 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal17g0181 AP2 1.1e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0181 - - gmx:100817386 221.476