LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal17g0178	ATGGCTGATGTTCTGGTTATGAAAGATATCGAAGCCATCGCTTCGCGTCTCGGAATCGATATAGATACTATCGATCTCGATTCAATTCGTCTCCCCACTGCTGATAATGTTGGCATTCCAAGTGATGATGAGGAGATTCTCCAAGAGGAGAATCTGGAATTTGAATCTGGATTCGGCAACATTATAGTTGTGGATAATCTACCAGTTGTTCCTAAGGAGAAGTTTGAGAAACTTGAAGGAGTTATTAGGAAGATCTATAGTCAGATTGGTGTTATTAAGGAAGATGGTCTTTGGATGCCTGTTGATCCTCAAACTGAGAAAACTTTGGGTTACTGCTTCATTGAATATAATACCCCTCAGGAAGCTGAGCTTGCTAAAGAGAGGACTCACGGATACAAACTGGATCGCGCACACGTATTTGCGGTGAACATGTTTGATGACTTTGATAGGTTCATGAAAGTTCCGGATCAGTGGGCTCCTCCTGAAACCAAGCCATATGCTCCTGGGGAAAATCTTCAAAATTGGCTCACTGATGCAAAAGCCCGAGATCAGTTTGTGATTCGTGCTGGTTCAGATACCGAGGTTTTATGGAATGATGCAAGGCATTTGAAACCTGATCCTGTTTATAAGCGTACGTTTTGGACTGAGAGCTTTGTGCAATGGTCGCCTCTGGGAACATACTTGGCAACAGTTCACAGGCAAGGGGCAGCTGTCTGGGGAGGTGCTTCAACCTTCAACCGTCTCATGCGTTATGCTCATCCACAGGTAAAACTTATTGATTTCTCACCCGGTGAGAAGTATTTGGTAACATATAGCAGCCATGAACCCAGCAACCCCCGAGATGCTAATAGAGTTGTGATTAATATATTTGATGTGAGGACTGGAAAAGTTATGAGGGATTTTAAAGGAAGTGCTGATGATTTTGCAATTGGAGGTGCTGGTGGTGTCACTGGGGTGTCTTGGCCTATTTTCAAATGGAGCAATGGAGGAGATGATAAGTACTTTGCAAGGATGGGAAAAAATGTACTCTCTGTATATGAGACAGACACCTTTTCTCTCATTGACAAGAAGTCCTTAAAGGTTGAAAATATAATGGATTTCAGCTGGTCTCCAACTGATCCAATTATTGCACTCTTTGTTCCTGAGATGGGAGGTGGTAACCAGCCTGCTAGGGTAAGTCTGGTTCAAATCCCCAGCAAAGAGGAACTCAGGCAGAAAAATCTGTTTAGCGTTAGTGACTGCAAGATGTACTGGCAAAGCAATGGAGATTACCTTGCTGTTAACGTAGACCGGTTTACAAAAACTAAGAAAAGCACATACACAGGCTTTGAACTTTTCTACATAAAAGAACGTGACATACCCATAGAAGTTCTAGAGCTTGAGAACAAGAATGACAAGATCATTGCATTTGCTTGGGAGCCAAAAGGCAATAGGTTTGCAGTTATCCATGGTGATAGTCCCAAGCCTGATGTTAGCATTTACACAATGAGGACTGCTCAGCACACCGGCCGAGTTTCTAAGCTCACTACTTTGAAAGGCAAGCAGGCAAATGCTCTGTTTTGGTCACCAGTAGGTCGCTTCATTGTACTAGCAGGGTTGAAAGGCTTTAATGGGCAGTTAGAATTTTACAATGTTGATGAACTTGAGACCATGGCTACTGCTGAACATTTTATGGCAACCGATATTGAATGGGATCCAACTGGAAGGTATGTTGCAACAGCCGTTACGTCAGTTCATGAAATGGAAAATGGTTTCAACATATGGTCTTTCAATGGCAAACATCTCTATCGGATACTGAAGGATCACTTCTTTCAGTTCTTATGGCGTCCAAGGCCACCATCTTTCTTGAGTGCGGAGAAAGAGGAAGAGATTGCAAAGAACTTGAAGAAGTATAGCAAGAAATACGAGGCCGAAGATCAAGATGTTTCATTGCTGCTCAGTGAGCAGGAGCGTGAAAAGCGTAGGATGTTGAAAGAAGAGTGGGACAAATGGATCAATGAATGGAAGAGGTTGCATGAAGAAGAGAAGTTATACAGGCAGAATCTTAGGGATGGAGAGGCTAGTGATGAAGAAGAGGAATACGAGGCCAAGGACATAGAAGTTGAGGAAGTGATTAATGTATCAGAAGAGATCCTTCACTTTGAATAA	2148	0.4274	MADVLVMKDIEAIASRLGIDIDTIDLDSIRLPTADNVGIPSDDEEILQEENLEFESGFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPQTEKTLGYCFIEYNTPQEAELAKERTHGYKLDRAHVFAVNMFDDFDRFMKVPDQWAPPETKPYAPGENLQNWLTDAKARDQFVIRAGSDTEVLWNDARHLKPDPVYKRTFWTESFVQWSPLGTYLATVHRQGAAVWGGASTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADDFAIGGAGGVTGVSWPIFKWSNGGDDKYFARMGKNVLSVYETDTFSLIDKKSLKVENIMDFSWSPTDPIIALFVPEMGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSNGDYLAVNVDRFTKTKKSTYTGFELFYIKERDIPIEVLELENKNDKIIAFAWEPKGNRFAVIHGDSPKPDVSIYTMRTAQHTGRVSKLTTLKGKQANALFWSPVGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDIEWDPTGRYVATAVTSVHEMENGFNIWSFNGKHLYRILKDHFFQFLWRPRPPSFLSAEKEEEIAKNLKKYSKKYEAEDQDVSLLLSEQEREKRRMLKEEWDKWINEWKRLHEEEKLYRQNLRDGEASDEEEEYEAKDIEVEEVINVSEEILHFE	715

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal17g0178	715	Hamap	Eukaryotic translation initiation factor 3 subunit B [EIF3B].	48	713	IPR011400	GO:0003723\|GO:0003743\|GO:0005852\|GO:0006413\|GO:0031369
	Lal17g0178	715	CDD	RRM_eIF3B	59	143	IPR034363	-
	Lal17g0178	715	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	82	135	IPR000504	GO:0003723
	Lal17g0178	715	PIRSF	Transl_init_eIF3b	7	713	IPR011400	GO:0003723\|GO:0003743\|GO:0005852\|GO:0006413\|GO:0031369
	Lal17g0178	715	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	60	147	IPR000504	GO:0003723
	Lal17g0178	715	Pfam	Eukaryotic translation initiation factor eIF2A	406	606	IPR013979	-
	Lal17g0178	715	PANTHER	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED	7	712	IPR011400	GO:0003723\|GO:0003743\|GO:0005852\|GO:0006413\|GO:0031369
	Lal17g0178	715	Coils	Coil	618	638	-	-
	Lal17g0178	715	PANTHER	BNACNNG51870D PROTEIN	7	712	-	-
	Lal17g0178	715	SUPERFAMILY	RNA-binding domain, RBD	57	137	IPR035979	GO:0003676
	Lal17g0178	715	Gene3D	-	181	383	IPR015943	GO:0005515
	Lal17g0178	715	Gene3D	-	416	631	IPR015943	GO:0005515
	Lal17g0178	715	SUPERFAMILY	DPP6 N-terminal domain-like	217	604	-	-
	Lal17g0178	715	Gene3D	-	55	154	IPR012677	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal17g0178	Lal-Chr17	1081410	1085709	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal17g0178	9	713	Eukaryotic Initiation Factors Gene Family	AT5G27640	76.771	0.0	1174

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal17g0178	K03253		-	gmx:100779711	1333.93

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal17g0178	17	1081410	1085709	Lal21g0289	21	1915800	1921835	LSH