Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0177 ATGGGTGGTAATGGTAGAGTTGAAGTTGTGAATGTGAAAGGGTGCTCAAGGCTCTTTTCATCTTCATTCAGAGGCTTGCAATCAATGGAGCCAATGTCTCCTGCTTCTTCCTCTATGGCTTCTGAACAAGTGCACGTGAGATCACGTGCTCCTTTTGCTGGTCTTGTTATATGTGTCACTGGTCTCTCTAAAGAAGCAAGGAATCAGGTCATGGAGGCTACACAGAGATTAGGTGGTCACTATAGCCCCAATTTGCATCCACAATGTACCCATTTGGTGAACAATTTGTGCTTACTGTTTCAGTGCTGTCATGAAATCTTTAACACTAAGTACAGCTTTGGTGGACGGAAATTTGACCATGCGCTAAAGCATGGAGCAAAGAATGGTCTCTTCATCGTCACATTGGGTTGGTTTGTGGATTGTGTCAGGAAAAATGTGAGGCTGAGCGAATCGCATTACAGTGTGAAGAGTTATGGGGATAACAGTATGCGCTTAGATGGAAACTCTTGTCTTCCTGCAAAAATCCATGAAACCAAGCATGCTAATAATGTTGAAGAAGTTCAAAAAATTTCTGGGAGTGAGTCTAACAGAAATTCTGACTTAACTTTATCCGGCTGTTCAATCTATGTTGATCCAGGAATTTCATGTGAATTGCGAAGCAAGGTTGTTGAGAGTGCCTCACGAGAAGGTGCTAGTTTGGTTGAACAATGGTTTGTTGGCTGCAATGTTAGCCATGTTGTGACTGAAGGGACATCCATACAAAGATATCTTGGACACTCTAGTAACCTCATTACACCGCTGTGGATTCTCAAAACAGCTAAGGAGAAATATGTGCAAAGACTTGTTCACCTGTCTGCTGATTTGGCAAGGCAATTTGGCTTGATGTTTGTGGACAATAATGACATTTCAGGGAAGGAAGTAATAAAGAAAAAAGTCCATGGCGACGAAAATGAAGTTAGTTATAAAGAAAGACAACAGATTGTGAATTCTGCCAAAATTGGTGTCAGAAATCGGCGTGGTCGTCGAATGCAGACTTGTCAGACTCCAATACGTCCTATAACACCCAACAACCTTCTCGACTGCATATGCTGGTCAATATCTGAGCCAACTTCAAGTGCTTCCATTTACACAGACTCTTCCAGTGTTGAAGATCGTAGTCGTAATCCTACGTCAACATTTTTTGATGCAAAAGAGGATGGCAAGGACTCAGAAGCTTCATTTTCAAACTCCACTCGTCCACTGACAGAAAGTGAGAAATCTGAGTTAATATTCAAAAACCATTTTTTGACCATACTCTTTCCAATTGACCGATTTGCTGAGATGGGTCCTTCTTCAAGAACATTTTTCAGCAATGACGGTTTTACATGTCTTCAGGTGTTGGATTATATACATGCATTTTATCAGGAAAACATTTCAAAGCAAGAAACAGAAGCTGCAATTCACACTGATTCAAGACATGCAGATAGGCTTAGATCAGTGTACTCTAGTAAGGAAACAGCAGAAAGTGGGTATGTGAATTTCAAAAGGATTGAATTCTTGGGCAGTCGTATAAGTTTTGAAATGTTGAAACGTGTAATCGGAGACAACAACTCCAATGTCTATGAACTTTTACTTAGGGCGTAA 1623 0.4079 MGGNGRVEVVNVKGCSRLFSSSFRGLQSMEPMSPASSSMASEQVHVRSRAPFAGLVICVTGLSKEARNQVMEATQRLGGHYSPNLHPQCTHLVNNLCLLFQCCHEIFNTKYSFGGRKFDHALKHGAKNGLFIVTLGWFVDCVRKNVRLSESHYSVKSYGDNSMRLDGNSCLPAKIHETKHANNVEEVQKISGSESNRNSDLTLSGCSIYVDPGISCELRSKVVESASREGASLVEQWFVGCNVSHVVTEGTSIQRYLGHSSNLITPLWILKTAKEKYVQRLVHLSADLARQFGLMFVDNNDISGKEVIKKKVHGDENEVSYKERQQIVNSAKIGVRNRRGRRMQTCQTPIRPITPNNLLDCICWSISEPTSSASIYTDSSSVEDRSRNPTSTFFDAKEDGKDSEASFSNSTRPLTESEKSELIFKNHFLTILFPIDRFAEMGPSSRTFFSNDGFTCLQVLDYIHAFYQENISKQETEAAIHTDSRHADRLRSVYSSKETAESGYVNFKRIEFLGSRISFEMLKRVIGDNNSNVYELLLRA 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0177 540 MobiDBLite consensus disorder prediction 390 405 - -
Lal17g0177 540 CDD BRCT_TopBP1_rpt2_like 51 145 - -
Lal17g0177 540 Pfam Family of unknown function (DUF6699) 363 524 IPR046522 -
Lal17g0177 540 ProSiteProfiles BRCT domain profile. 198 276 IPR001357 -
Lal17g0177 540 MobiDBLite consensus disorder prediction 372 389 - -
Lal17g0177 540 SUPERFAMILY BRCT domain 49 156 IPR036420 -
Lal17g0177 540 SMART BRCT_7 49 145 IPR001357 -
Lal17g0177 540 SMART BRCT_7 200 276 IPR001357 -
Lal17g0177 540 Pfam twin BRCT domain 55 123 IPR001357 -
Lal17g0177 540 Gene3D BRCT domain 50 157 IPR036420 -
Lal17g0177 540 MobiDBLite consensus disorder prediction 372 413 - -
Lal17g0177 540 ProSiteProfiles BRCT domain profile. 47 155 IPR001357 -
Lal17g0177 540 PANTHER BRCT DOMAIN DNA REPAIR PROTEIN-RELATED 3 540 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0177 Lal-Chr17 1071171 1076011 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0177 51 155 Core DNA Replication Machinery Family AT1G77320 32.381 3.94e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0177 - - gmx:100815253 823.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0177 17 1071171 1076011 Lal17g0177 17 1071171 1076011 ECH
Lal17g0177 17 1071171 1076011 Lal21g0288 21 1909786 1915030 LSH