Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0175 ATGATGACTTCTAATAAGAAGATTAAATGGAAGTCTATTGTCTTTATCTTAAGTTGTTACAAGTCAAAATGCACCTTGGAGGAATCAGAAAAGCAAGGTTCTTTGGGAAGGCTATGTCTCTCAGATATAAGCATTTCTAGCTCTATTGAAGATCTTTCCATTTCACTCGTTGGTTCAAAGCTTTACACATTTAGTCTAGAGGAGCTAAGAGAAGCAACACATAATTTCTCATGGAGTAATCATATTGGTGAAGGTGGGTTTGGACCGGTGCACAAAGGTTTTGTTGATGACAGACTTAGACCTGGTTTGAAGGCTCAGCCTGTAGCTGTGAAACAATTGGACTTGGATGGCTTGCAAGGTCATAGGGAGTGGCTGGCAGAGATTATATTTCTTGGACAGTTAAGGCATCCACATCTTGTGAAGTTAATTGGGTACTGTTCTGAAGATGAGCATAGGCTTTTGGTGTATGAATACATGGCTAGAGGCAGCTTGGAGAATCAACTCTTCAGAAGGTACTCTGTTGCCTTGCCATGGTCAACTAGGATGAAGATTGCATTGGGTGCGGCTAAGGGTCTAGCCTTCCTTCATGATGCAGATAAGCCTGTAATATATAGAGATTTCAAAGCTTCAAATATCTTACTAGACTCGGATTACACAGCTAAATTATCAGACTTTGGACTAGCTAAGGATGGACCTGATGGGGGAGACACACATGTAACTACAAGAATAATGGGAACACATGGATATGCTGCTCCTGAATACATCATGACAGGTCATCTTACTACTAAGAGTGATGTGTATAGCTATGGAGTTGTTATGCTGGAATTGCTTACAGGAAAAAGGGTAGTGGATAAGACAAGGTCACAGGGACAGAGAAGCCTGGTGGAATGGGCAAGGCCACTATTGAGAGATCATAGAAAGCTGCAGCGTATCATAGACCCAAGATTGGAAGGGCAGTTTCCTACAAAAGGAGCAATGAAGGTTGCTGCATTAACTTATAAATGCTTAAGCCACCACCCAAATCCAAGGCCACCTATGAGTGATGTGGTCAAGATATTGGAGTCACTTCAGGACTTTGATGATGAGCTCACTGGACCATTTGTGTATGTTGCAGTAAGTGAAAGTGATCACTGA 1134 0.418 MMTSNKKIKWKSIVFILSCYKSKCTLEESEKQGSLGRLCLSDISISSSIEDLSISLVGSKLYTFSLEELREATHNFSWSNHIGEGGFGPVHKGFVDDRLRPGLKAQPVAVKQLDLDGLQGHREWLAEIIFLGQLRHPHLVKLIGYCSEDEHRLLVYEYMARGSLENQLFRRYSVALPWSTRMKIALGAAKGLAFLHDADKPVIYRDFKASNILLDSDYTAKLSDFGLAKDGPDGGDTHVTTRIMGTHGYAAPEYIMTGHLTTKSDVYSYGVVMLELLTGKRVVDKTRSQGQRSLVEWARPLLRDHRKLQRIIDPRLEGQFPTKGAMKVAALTYKCLSHHPNPRPPMSDVVKILESLQDFDDELTGPFVYVAVSESDH 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0175 377 ProSiteProfiles Protein kinase domain profile. 76 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal17g0175 377 Pfam Protein tyrosine and serine/threonine kinase 78 353 IPR001245 GO:0004672|GO:0006468
Lal17g0175 377 Gene3D Transferase(Phosphotransferase) domain 1 159 365 - -
Lal17g0175 377 ProSitePatterns Serine/Threonine protein kinases active-site signature. 202 214 IPR008271 GO:0004672|GO:0006468
Lal17g0175 377 PANTHER OS01G0588500 PROTEIN-RELATED 19 375 - -
Lal17g0175 377 Gene3D Phosphorylase Kinase; domain 1 41 158 - -
Lal17g0175 377 PANTHER KINASE 1B 19 375 - -
Lal17g0175 377 SUPERFAMILY Protein kinase-like (PK-like) 50 355 IPR011009 -
Lal17g0175 377 CDD STKc_IRAK 82 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0175 Lal-Chr17 1063852 1071060 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0175 63 353 Glycoside Hydrolase AT3G07070 54.422 1.43e-105 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lal17g0175 PK_Tyr_Ser-Thr 3.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0175 - - gmx:100802636 611.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0175 17 1063852 1071060 Lal17g0175 17 1063852 1071060 ECH
Lal19g1193 19 15348507 15351211 Lal17g0175 17 1063852 1071060 ECH
Lal17g1494 17 16375334 16382295 Lal17g0175 17 1063852 1071060 ECH
Lal18g0113 18 906732 909570 Lal17g0175 17 1063852 1071060 ECH
Lal17g0175 17 1063852 1071060 Lal4g0184 4 1152221 1154492 LSH